Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| PIEINNCF_1 | 2707689 | 2706985 | WalR | 2.09e-111 | transcriptional regulatory protein | 83.40 | 100.00 | EPH95667 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| PIEINNCF_2 | 21363 | 22397 | rep38 | 1046 / 1104 | 82.41 | CP002655 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| PIEINNCF_1 | 0.0 | 1.0 | 0.0 |
| PIEINNCF_2 | 1.0 | 0.0 | 1.0 |
| PIEINNCF_3 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| PIEINNCF_1 | 632844 | 643002 | False | Siphoviridae | VOG4609, VOG0205, VOG4841, VOG4581, VOG0944, VOG5532, VOG4544, VOG5051, VOG4556, VOG4568 |
| PIEINNCF_1 | 1031544 | 1066997 | False | Siphoviridae | VOG0862, VOG9667, VOG6495, VOG1305, VOG8241, VOG1309, VOG0186, VOG4566, VOG0226, VOG8987, VOG11003, VOG9860, VOG6623, VOG4693, VOG0198, VOG0143, VOG4643, VOG4570, VOG0796, VOG4544, VOG0720, VOG4564, VOG4555, VOG1329, VOG4713, VOG0723, VOG5660, VOG0724, VOG0799, VOG0725, VOG0800, VOG4545, VOG4605, VOG5532, VOG0944, VOG4605, VOG4599, VOG7896, VOG7888, VOG0054, VOG4918 |
| PIEINNCF_1 | 1461238 | 1490541 | False | Siphoviridae | VOG0275, VOG6495, VOG0376, VOG8294, VOG0703, VOG0753, VOG7896, VOG6455, VOG10016, VOG4599, VOG4605, VOG6163, VOG4545, VOG0660, VOG0209, VOG4586, VOG0944, VOG5532, VOG0207, VOG0205, VOG5532, VOG0944, VOG4568, VOG4556, VOG0202, VOG1886, VOG4581, VOG0226 |
| PIEINNCF_1 | 1575203 | 1587921 | False | Siphoviridae | VOG0944, VOG5532, VOG0198, VOG6140, VOG0982, VOG0189, VOG4799, VOG3642, VOG10867, VOG0181, VOG7236, VOG5353, VOG8520, VOG0862, VOG3479, VOG3685, VOG0002 |
Phigaro v2.4.0 (Database: Jan. 2024 release)