Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 0 | 0 | 3.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| NGPCBHCD_67 | 39411 | 40148 | ErmB | ARO:3000375 | ErmB | 99.59 | 98.79 | AF242872.1 |
| NGPCBHCD_36 | 4041 | 5960 | tet(O/W/32/O) | ARO:3007122 | tet(O/W/32/O) | 99.53 | 100.00 | DQ525023.1 |
| NGPCBHCD_55 | 82 | 576 | lnuC | ARO:3002837 | lnuC | 97.56 | 100.00 | AY928180.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| NGPCBHCD_67 | 39411 | 40148 | erm(B) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.86 | 100.00 | X72021 |
| NGPCBHCD_36 | 4041 | 5960 | tet(O/W/32/O/W/O) | Doxycycline, Tetracycline, Minocycline | 99.79 | 100.00 | DQ525023 |
| NGPCBHCD_55 | 82 | 576 | lnu(C) | Lincomycin | 98.99 | 100.00 | AY928180 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| NGPCBHCD_67 | 39414 | 40148 | erm(B) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B) | BLASTX | 99.59 | 100.00 | WP_001038795.1 |
| NGPCBHCD_36 | 4047 | 5960 | tet(O/W/32/O) | tetracycline resistance ribosomal protection mosaic protein Tet(O/W/32/O) | BLASTX | 99.53 | 99.84 | WP_063856419.1 |
| NGPCBHCD_55 | 85 | 576 | lnu(C) | lincosamide nucleotidyltransferase Lnu(C) | BLASTX | 97.56 | 100.00 | WP_063851341.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| NGPCBHCD_1 | 0.0 | 1.0 | 0.0 |
| NGPCBHCD_2 | 0.0 | 1.0 | 0.0 |
| NGPCBHCD_3 | 0.0 | 1.0 | 0.0 |
| NGPCBHCD_4 | 0.0 | 1.0 | 0.0 |
| NGPCBHCD_5 | 0.0 | 1.0 | 0.0 |
| NGPCBHCD_6 | 0.0 | 1.0 | 0.0 |
| NGPCBHCD_7 | 0.0 | 1.0 | 0.0 |
| NGPCBHCD_8 | 0.0 | 1.0 | 0.0 |
| NGPCBHCD_9 | 0.0 | 1.0 | 0.0 |
| NGPCBHCD_10 | 0.0 | 1.0 | 0.0 |
| NGPCBHCD_11 | 0.0 | 1.0 | 0.0 |
| NGPCBHCD_12 | 0.0 | 1.0 | 0.0 |
| NGPCBHCD_13 | 0.0 | 1.0 | 0.0 |
| NGPCBHCD_14 | 0.0 | 1.0 | 0.0 |
| NGPCBHCD_15 | 0.0 | 1.0 | 0.0 |
| NGPCBHCD_16 | 0.0 | 1.0 | 0.0 |
| NGPCBHCD_17 | 0.0 | 1.0 | 0.0 |
| NGPCBHCD_18 | 0.0 | 1.0 | 0.0 |
| NGPCBHCD_19 | 0.0 | 1.0 | 0.0 |
| NGPCBHCD_20 | 0.0 | 1.0 | 0.0 |
| NGPCBHCD_21 | 0.0 | 1.0 | 0.0 |
| NGPCBHCD_22 | 0.0 | 1.0 | 0.0 |
| NGPCBHCD_23 | 0.0 | 1.0 | 0.0 |
| NGPCBHCD_24 | 0.0 | 1.0 | 0.0 |
| NGPCBHCD_25 | 0.0 | 1.0 | 0.0 |
| NGPCBHCD_26 | 0.0 | 1.0 | 0.0 |
| NGPCBHCD_27 | 0.0 | 1.0 | 0.0 |
| NGPCBHCD_28 | 0.0 | 1.0 | 0.0 |
| NGPCBHCD_29 | 0.0 | 1.0 | 0.0 |
| NGPCBHCD_30 | 0.0 | 1.0 | 0.0 |
| NGPCBHCD_31 | 0.0 | 1.0 | 0.0 |
| NGPCBHCD_32 | 0.0 | 1.0 | 0.0 |
| NGPCBHCD_33 | 0.0 | 1.0 | 0.0 |
| NGPCBHCD_34 | 0.0 | 1.0 | 0.0 |
| NGPCBHCD_35 | 0.0 | 1.0 | 0.0 |
| NGPCBHCD_36 | 0.0 | 1.0 | 0.0 |
| NGPCBHCD_37 | 0.0 | 1.0 | 0.0 |
| NGPCBHCD_38 | 1.0 | 0.0 | 1.0 |
| NGPCBHCD_39 | 0.0 | 1.0 | 0.0 |
| NGPCBHCD_40 | 1.0 | 0.0 | 1.0 |
| NGPCBHCD_41 | 0.0 | 1.0 | 0.0 |
| NGPCBHCD_42 | 0.0 | 1.0 | 0.0 |
| NGPCBHCD_43 | 0.0 | 1.0 | 0.0 |
| NGPCBHCD_44 | 0.0 | 1.0 | 0.0 |
| NGPCBHCD_45 | 0.0 | 1.0 | 0.0 |
| NGPCBHCD_46 | 1.0 | 0.0 | 1.0 |
| NGPCBHCD_47 | 0.0 | 1.0 | 0.0 |
| NGPCBHCD_48 | 0.0 | 1.0 | 0.0 |
| NGPCBHCD_49 | 0.0 | 1.0 | 0.0 |
| NGPCBHCD_51 | 1.0 | 0.0 | 1.0 |
| NGPCBHCD_52 | 0.0 | 1.0 | 0.0 |
| NGPCBHCD_54 | 0.0 | 1.0 | 0.0 |
| NGPCBHCD_55 | 1.0 | 0.0 | 1.0 |
| NGPCBHCD_56 | 0.0 | 1.0 | 0.0 |
| NGPCBHCD_57 | 1.0 | 0.0 | 1.0 |
| NGPCBHCD_58 | 0.0 | 1.0 | 0.0 |
| NGPCBHCD_59 | 1.0 | 0.0 | 1.0 |
| NGPCBHCD_60 | 1.0 | 0.0 | 1.0 |
| NGPCBHCD_61 | 1.0 | 0.0 | 1.0 |
| NGPCBHCD_63 | 1.0 | 0.0 | 1.0 |
| NGPCBHCD_64 | 1.0 | 0.0 | 1.0 |
| NGPCBHCD_65 | 1.0 | 0.0 | 1.0 |
| NGPCBHCD_66 | 1.0 | 0.0 | 1.0 |
| NGPCBHCD_67 | 0.0 | 1.0 | 0.0 |
| NGPCBHCD_68 | 1.0 | 0.0 | 1.0 |
| NGPCBHCD_69 | 0.0 | 1.0 | 0.0 |
| NGPCBHCD_78 | 0.0 | 1.0 | 0.0 |
| NGPCBHCD_82 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| NGPCBHCD_7 | 2740 | 27128 | False | Siphoviridae | VOG9344, VOG0861, VOG4856, VOG4612, VOG4659, VOG4633, VOG6163, VOG0541, VOG4586, VOG0704, VOG0539, VOG4589, VOG0204, VOG4553, VOG4568, VOG4556, VOG4544, VOG4581, VOG4841, VOG6274, VOG5988 |
| NGPCBHCD_23 | 61976 | 85704 | False | Siphoviridae | VOG4618, VOG0612, VOG4544, VOG0691, VOG0692, VOG4555, VOG1329, VOG0695, VOG0696, VOG0697, VOG0698, VOG9763, VOG0701, VOG5904, VOG0801, VOG4619, VOG5859, VOG5008, VOG9945, VOG4705, VOG0861 |
Phigaro v2.4.0 (Database: Jan. 2024 release)