Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 0 | 1 | 3.16 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| BIBLKPKL_1 | 296601 | 297095 | lnuC | ARO:3002837 | lnuC | 97.56 | 100.00 | AY928180.1 |
| BIBLKPKL_4 | 9845 | 11770 | tet(M) | ARO:3000186 | tet(M) | 98.60 | 100.31 | AB039845.1 |
| BIBLKPKL_4 | 5137 | 5784 | catA8 | ARO:3004658 | catA8 | 98.60 | 100.00 | JQ922409.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| BIBLKPKL_4 | 5137 | 5784 | cat | Chloramphenicol | 99.54 | 100.00 | U35036 |
| BIBLKPKL_4 | 9845 | 11770 | tet(M) | Doxycycline, Tetracycline, Minocycline | 99.48 | 100.00 | AM990992 |
| BIBLKPKL_1 | 296601 | 297095 | lnu(C) | Lincomycin | 98.99 | 100.00 | AY928180 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| BIBLKPKL_4 | 9848 | 11770 | tet(M) | tetracycline resistance ribosomal protection protein Tet(M) | BLASTX | 99.38 | 100.00 | WP_000691736.1 |
| BIBLKPKL_4 | 5140 | 5784 | catA | type A-8 chloramphenicol O-acetyltransferase | BLASTX | 99.07 | 100.00 | WP_002352254.1 |
| BIBLKPKL_1 | 296601 | 297092 | lnu(C) | lincosamide nucleotidyltransferase Lnu(C) | BLASTX | 97.56 | 100.00 | WP_063851341.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| BIBLKPKL_1 | 50151 | 50858 | WalR | 6.30e-115 | transcriptional regulatory protein | 85.59 | 100.43 | EPH95667 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| BIBLKPKL_1 | 0.0 | 1.0 | 0.0 |
| BIBLKPKL_2 | 1.0 | 0.0 | 1.0 |
| BIBLKPKL_3 | 1.0 | 0.0 | 1.0 |
| BIBLKPKL_4 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| BIBLKPKL_1 | 552879 | 562395 | False | Siphoviridae | VOG9859, VOG1561, VOG0862, VOG6495, VOG9667, VOG4552, VOG6128, VOG0535, VOG0322, VOG6545, VOG0514, VOG4566, VOG0025 |
| BIBLKPKL_1 | 569819 | 591062 | False | Siphoviridae | VOG4841, VOG4581, VOG1886, VOG0202, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG9583, VOG0207, VOG4586, VOG9312, VOG0866, VOG5793, VOG0801, VOG3462, VOG4856, VOG8134 |
Phigaro v2.4.0 (Database: Jan. 2024 release)