Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| MLNMNDFE_1 | 86413 | 87117 | WalR | 7.21e-115 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| MLNMNDFE_22 | 409143 | 409337 | CspR | 1.87e-29 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| MLNMNDFE_22 | 409143 | 409340 | CspA | 2.86e-29 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| MLNMNDFE_17 | 2671 | 3230 | rep38 | 560 / 903 | 98.75 | CP005943 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| MLNMNDFE_1 | 0.0 | 1.0 | 0.0 |
| MLNMNDFE_2 | 0.0 | 1.0 | 0.0 |
| MLNMNDFE_3 | 0.0 | 1.0 | 0.0 |
| MLNMNDFE_4 | 0.0 | 1.0 | 0.0 |
| MLNMNDFE_5 | 0.0 | 1.0 | 0.0 |
| MLNMNDFE_6 | 0.0 | 1.0 | 0.0 |
| MLNMNDFE_7 | 0.0 | 1.0 | 0.0 |
| MLNMNDFE_8 | 0.0 | 1.0 | 0.0 |
| MLNMNDFE_9 | 0.0 | 1.0 | 0.0 |
| MLNMNDFE_10 | 0.0 | 1.0 | 0.0 |
| MLNMNDFE_11 | 0.0 | 1.0 | 0.0 |
| MLNMNDFE_12 | 1.0 | 0.0 | 1.0 |
| MLNMNDFE_13 | 1.0 | 0.0 | 1.0 |
| MLNMNDFE_14 | 1.0 | 0.0 | 1.0 |
| MLNMNDFE_15 | 1.0 | 0.0 | 1.0 |
| MLNMNDFE_16 | 1.0 | 0.0 | 1.0 |
| MLNMNDFE_17 | 1.0 | 0.0 | 1.0 |
| MLNMNDFE_18 | 1.0 | 0.0 | 1.0 |
| MLNMNDFE_19 | 1.0 | 0.0 | 1.0 |
| MLNMNDFE_20 | 1.0 | 0.0 | 1.0 |
| MLNMNDFE_21 | 1.0 | 0.0 | 1.0 |
| MLNMNDFE_22 | 0.0 | 1.0 | 0.0 |
| MLNMNDFE_23 | 1.0 | 0.0 | 1.0 |
| MLNMNDFE_24 | 1.0 | 0.0 | 1.0 |
| MLNMNDFE_25 | 0.0 | 1.0 | 0.0 |
| MLNMNDFE_26 | 1.0 | 0.0 | 1.0 |
| MLNMNDFE_27 | 1.0 | 0.0 | 1.0 |
| MLNMNDFE_28 | 0.0 | 1.0 | 0.0 |
| MLNMNDFE_29 | 1.0 | 0.0 | 1.0 |
| MLNMNDFE_30 | 1.0 | 0.0 | 1.0 |
| MLNMNDFE_31 | 0.0 | 1.0 | 0.0 |
| MLNMNDFE_32 | 1.0 | 0.0 | 1.0 |
| MLNMNDFE_33 | 0.0 | 1.0 | 0.0 |
| MLNMNDFE_34 | 1.0 | 0.0 | 1.0 |
| MLNMNDFE_35 | 1.0 | 0.0 | 1.0 |
| MLNMNDFE_36 | 1.0 | 0.0 | 1.0 |
| MLNMNDFE_38 | 1.0 | 0.0 | 1.0 |
| MLNMNDFE_39 | 0.0 | 1.0 | 0.0 |
| MLNMNDFE_40 | 1.0 | 0.0 | 1.0 |
| MLNMNDFE_43 | 1.0 | 0.0 | 1.0 |
| MLNMNDFE_44 | 0.0 | 1.0 | 0.0 |
| MLNMNDFE_55 | 0.0 | 1.0 | 0.0 |
| MLNMNDFE_66 | 0.0 | 1.0 | 0.0 |
| MLNMNDFE_77 | 0.0 | 1.0 | 0.0 |
| MLNMNDFE_87 | 0.0 | 1.0 | 0.0 |
| MLNMNDFE_91 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| MLNMNDFE_11 | 79282 | 116401 | False | Siphoviridae | VOG0226, VOG10904, VOG0514, VOG8647, VOG0189, VOG1298, VOG0044, VOG0044, VOG3643, VOG4010, VOG0198, VOG4841, VOG4581, VOG1886, VOG7540, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG0207, VOG4586, VOG5852, VOG0660, VOG5631, VOG4605, VOG4599, VOG10957, VOG8870, VOG0254, VOG9998, VOG4615, VOG0753, VOG0054, VOG1521, VOG1191, VOG3443 |
| MLNMNDFE_22 | 78604 | 103172 | False | Siphoviridae | VOG0638, VOG0611, VOG0691, VOG0692, VOG9317, VOG4711, VOG0695, VOG0696, VOG0697, VOG6548, VOG9763, VOG0701, VOG6163, VOG0801, VOG4619, VOG8704, VOG8438, VOG4612, VOG4334, VOG4705, VOG8294, VOG1637, VOG0054 |
| MLNMNDFE_33 | 248185 | 279990 | False | Siphoviridae | VOG0186, VOG6495, VOG4566, VOG2591, VOG4693, VOG0198, VOG9295, VOG0796, VOG4544, VOG0720, VOG4564, VOG10914, VOG3434, VOG1887, VOG4713, VOG1330, VOG0704, VOG4634, VOG1333, VOG1334, VOG4545, VOG1335, VOG10608, VOG3498 |
Phigaro v2.4.0 (Database: Jan. 2024 release)