Probiotic potential risk score


ARGs VFs PGs PPRS
0022.00

PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).

Antibiotic resistance genes


Comprehensive Antibiotic Resistance Database (CARD)

Query ID Begin End ARO name ARO accession CARD name Identity Coverage Accession no.
No hit found

RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)

ResFinder

Query ID Begin End Resistance gene Phenotype Identity Coverage Accession no.
No hit found

ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)

AMRFinderPlus

Query ID Begin End Gene symbol Sequence name Method Identity Coverage Accession no.
No hit found

AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)

Virulence factors


Virulence Factor Database (VFDB)

Query ID qstart qend Gene name e-value VF name VF category Identity Coverage Accession no.
No hit found

BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)

VirulenceFinder

Query ID Begin End Database Virulence factor Protein function Identity Coverage Accession no.
No hit found

VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)

Pathogenic genes


PHI-base

Query ID qstart qend Gene name e-value Function Identity Coverage Gene ID
AGOFIPJL_7356696373WalR7.65e-115transcriptional regulatory protein84.25100.00EPH95667
AGOFIPJL_281403013836CspR9.25e-31cold shock protein84.6198.48AAO82613
AGOFIPJL_281403013833CspA1.42e-30cold shock protein84.85100.00CAA62903

BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)

Plasmid


PlasmidFinder

Query ID Begin End Plasmid Query / Template Identity Accession no.
AGOFIPJL_436711600rep28930 / 93097.74CP003162
AGOFIPJL_311597816879rep38903 / 90396.12CP005943
AGOFIPJL_251142712527repUS731101 / 110194.28CP002654

PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)

PlasmidHunter

Query ID Prediction Chromosome Plasmid
AGOFIPJL_80.01.00.0
AGOFIPJL_90.01.00.0
AGOFIPJL_100.01.00.0
AGOFIPJL_110.01.00.0
AGOFIPJL_120.01.00.0
AGOFIPJL_130.01.00.0
AGOFIPJL_140.01.00.0
AGOFIPJL_150.01.00.0
AGOFIPJL_160.01.00.0
AGOFIPJL_170.01.00.0
AGOFIPJL_180.01.00.0
AGOFIPJL_190.01.00.0
AGOFIPJL_200.01.00.0
AGOFIPJL_210.01.00.0
AGOFIPJL_220.01.00.0
AGOFIPJL_230.01.00.0
AGOFIPJL_240.01.00.0
AGOFIPJL_251.00.01.0
AGOFIPJL_260.01.00.0
AGOFIPJL_271.00.01.0
AGOFIPJL_280.01.00.0
AGOFIPJL_290.01.00.0
AGOFIPJL_301.00.01.0
AGOFIPJL_311.00.01.0
AGOFIPJL_321.00.01.0
AGOFIPJL_330.01.00.0
AGOFIPJL_340.01.00.0
AGOFIPJL_350.01.00.0
AGOFIPJL_360.01.00.0
AGOFIPJL_371.00.01.0
AGOFIPJL_381.00.01.0
AGOFIPJL_391.00.01.0
AGOFIPJL_400.01.00.0
AGOFIPJL_411.00.01.0
AGOFIPJL_421.00.01.0
AGOFIPJL_431.00.01.0
AGOFIPJL_451.00.01.0
AGOFIPJL_461.00.01.0
AGOFIPJL_471.00.01.0
AGOFIPJL_481.00.01.0
AGOFIPJL_490.01.00.0
AGOFIPJL_510.01.00.0
AGOFIPJL_521.00.01.0
AGOFIPJL_531.00.01.0
AGOFIPJL_541.00.01.0
AGOFIPJL_551.00.01.0
AGOFIPJL_561.00.01.0
AGOFIPJL_571.00.01.0
AGOFIPJL_581.00.01.0
AGOFIPJL_591.00.01.0
AGOFIPJL_601.00.01.0
AGOFIPJL_611.00.01.0
AGOFIPJL_620.01.00.0
AGOFIPJL_730.01.00.0
AGOFIPJL_830.01.00.0
AGOFIPJL_940.01.00.0
AGOFIPJL_1050.01.00.0

PlasmidHunter v 1.4.5 (Database: May. 2024 release)

Prophage


Phigaro

Query ID Begin End Transposable Taxonomy pVOGs
AGOFIPJL_14199425863FalseSiphoviridaeVOG0765, VOG0602, VOG3325, VOG4705, VOG0804, VOG8438, VOG3463, VOG3462, VOG0801, VOG3949, VOG6163, VOG3636, VOG1323, VOG0725, VOG0799, VOG9583, VOG0723, VOG4713, VOG1887, VOG3434, VOG4564, VOG0720, VOG10227, VOG0796, VOG0638
AGOFIPJL_143426536769FalseSiphoviridaeVOG0181, VOG3172, VOG9667, VOG4602
AGOFIPJL_143939854243FalseSiphoviridaeVOG1347, VOG5151, VOG4567, VOG6054, VOG6884, VOG0275, VOG0198, VOG0204, VOG4568, VOG4556, VOG2935, VOG4544, VOG4581, VOG4841, VOG0205
AGOFIPJL_29135439162789FalseSiphoviridaeVOG4615, VOG9998, VOG0254, VOG8870, VOG10957, VOG4599, VOG4605, VOG0660, VOG4586, VOG0207, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556, VOG4544, VOG4581, VOG0198, VOG3643, VOG0044

Phigaro v2.4.0 (Database: Jan. 2024 release)


Insertion sequence (IS) elements