Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| PJJHHMPO_9 | 91770 | 92474 | WalR | 7.51e-115 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| PJJHHMPO_20 | 44336 | 44530 | CspR | 2.58e-30 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| PJJHHMPO_20 | 44336 | 44533 | CspA | 3.95e-30 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| PJJHHMPO_8 | 0.0 | 1.0 | 0.0 |
| PJJHHMPO_9 | 0.0 | 1.0 | 0.0 |
| PJJHHMPO_10 | 0.0 | 1.0 | 0.0 |
| PJJHHMPO_11 | 0.0 | 1.0 | 0.0 |
| PJJHHMPO_12 | 0.0 | 1.0 | 0.0 |
| PJJHHMPO_13 | 0.0 | 1.0 | 0.0 |
| PJJHHMPO_14 | 0.0 | 1.0 | 0.0 |
| PJJHHMPO_15 | 0.0 | 1.0 | 0.0 |
| PJJHHMPO_16 | 0.0 | 1.0 | 0.0 |
| PJJHHMPO_17 | 0.0 | 1.0 | 0.0 |
| PJJHHMPO_18 | 0.0 | 1.0 | 0.0 |
| PJJHHMPO_19 | 0.0 | 1.0 | 0.0 |
| PJJHHMPO_20 | 0.0 | 1.0 | 0.0 |
| PJJHHMPO_21 | 0.0 | 1.0 | 0.0 |
| PJJHHMPO_22 | 0.0 | 1.0 | 0.0 |
| PJJHHMPO_23 | 0.0 | 1.0 | 0.0 |
| PJJHHMPO_24 | 1.0 | 0.0 | 1.0 |
| PJJHHMPO_25 | 0.0 | 1.0 | 0.0 |
| PJJHHMPO_26 | 1.0 | 0.0 | 1.0 |
| PJJHHMPO_27 | 1.0 | 0.0 | 1.0 |
| PJJHHMPO_28 | 0.0 | 1.0 | 0.0 |
| PJJHHMPO_29 | 0.0 | 1.0 | 0.0 |
| PJJHHMPO_30 | 1.0 | 0.0 | 1.0 |
| PJJHHMPO_31 | 1.0 | 0.0 | 1.0 |
| PJJHHMPO_32 | 1.0 | 0.0 | 1.0 |
| PJJHHMPO_33 | 0.0 | 1.0 | 0.0 |
| PJJHHMPO_34 | 1.0 | 0.0 | 1.0 |
| PJJHHMPO_35 | 1.0 | 0.0 | 1.0 |
| PJJHHMPO_36 | 1.0 | 0.0 | 1.0 |
| PJJHHMPO_37 | 1.0 | 0.0 | 1.0 |
| PJJHHMPO_38 | 1.0 | 0.0 | 1.0 |
| PJJHHMPO_39 | 1.0 | 0.0 | 1.0 |
| PJJHHMPO_40 | 0.0 | 1.0 | 0.0 |
| PJJHHMPO_41 | 1.0 | 0.0 | 1.0 |
| PJJHHMPO_42 | 0.0 | 1.0 | 0.0 |
| PJJHHMPO_43 | 1.0 | 0.0 | 1.0 |
| PJJHHMPO_44 | 1.0 | 0.0 | 1.0 |
| PJJHHMPO_45 | 1.0 | 0.0 | 1.0 |
| PJJHHMPO_46 | 1.0 | 0.0 | 1.0 |
| PJJHHMPO_47 | 1.0 | 0.0 | 1.0 |
| PJJHHMPO_48 | 1.0 | 0.0 | 1.0 |
| PJJHHMPO_49 | 1.0 | 0.0 | 1.0 |
| PJJHHMPO_51 | 0.0 | 1.0 | 0.0 |
| PJJHHMPO_52 | 1.0 | 0.0 | 1.0 |
| PJJHHMPO_53 | 1.0 | 0.0 | 1.0 |
| PJJHHMPO_54 | 1.0 | 0.0 | 1.0 |
| PJJHHMPO_55 | 1.0 | 0.0 | 1.0 |
| PJJHHMPO_56 | 1.0 | 0.0 | 1.0 |
| PJJHHMPO_57 | 1.0 | 0.0 | 1.0 |
| PJJHHMPO_58 | 1.0 | 0.0 | 1.0 |
| PJJHHMPO_59 | 1.0 | 0.0 | 1.0 |
| PJJHHMPO_60 | 1.0 | 0.0 | 1.0 |
| PJJHHMPO_61 | 1.0 | 0.0 | 1.0 |
| PJJHHMPO_62 | 0.0 | 1.0 | 0.0 |
| PJJHHMPO_63 | 1.0 | 0.0 | 1.0 |
| PJJHHMPO_65 | 1.0 | 0.0 | 1.0 |
| PJJHHMPO_73 | 0.0 | 1.0 | 0.0 |
| PJJHHMPO_84 | 0.0 | 1.0 | 0.0 |
| PJJHHMPO_95 | 0.0 | 1.0 | 0.0 |
| PJJHHMPO_106 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| PJJHHMPO_12 | 66618 | 98489 | False | Siphoviridae | VOG0602, VOG9888, VOG8917, VOG9997, VOG3498, VOG4619, VOG0801, VOG6163, VOG0541, VOG4586, VOG0704, VOG0539, VOG4589, VOG0562, VOG4553, VOG4573, VOG4556, VOG4844, VOG1637, VOG4673, VOG0586, VOG0327, VOG4609, VOG4632, VOG6545, VOG0322, VOG4548, VOG0321, VOG8925 |
| PJJHHMPO_21 | 13769 | 25622 | False | Siphoviridae | VOG0198, VOG0204, VOG4568, VOG4556, VOG2935, VOG4544, VOG4581, VOG4841, VOG0205, VOG4609, VOG4632 |
| PJJHHMPO_23 | 3161 | 23221 | False | Siphoviridae | VOG5616, VOG3699, VOG0691, VOG0692, VOG9317, VOG4711, VOG0695, VOG0696, VOG0697, VOG6548, VOG9763, VOG0701, VOG0801, VOG4619, VOG4619 |
| PJJHHMPO_24 | 4311 | 21558 | False | Siphoviridae | VOG4605, VOG6163, VOG0660, VOG4586, VOG0207, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556, VOG0202, VOG1886, VOG4581, VOG0468 |
| PJJHHMPO_73 | 145586 | 164633 | False | Siphoviridae | VOG6005, VOG3643, VOG0198, VOG4841, VOG4581, VOG1886, VOG0202, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG0207, VOG4586, VOG0209, VOG5904 |
Phigaro v2.4.0 (Database: Jan. 2024 release)