Probiotic potential risk score


ARGs VFs PGs PPRS
0022.00

PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).

Antibiotic resistance genes


Comprehensive Antibiotic Resistance Database (CARD)

Query ID Begin End ARO name ARO accession CARD name Identity Coverage Accession no.
No hit found

RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)

ResFinder

Query ID Begin End Resistance gene Phenotype Identity Coverage Accession no.
No hit found

ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)

AMRFinderPlus

Query ID Begin End Gene symbol Sequence name Method Identity Coverage Accession no.
No hit found

AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)

Virulence factors


Virulence Factor Database (VFDB)

Query ID qstart qend Gene name e-value VF name VF category Identity Coverage Accession no.
No hit found

BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)

VirulenceFinder

Query ID Begin End Database Virulence factor Protein function Identity Coverage Accession no.
No hit found

VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)

Pathogenic genes


PHI-base

Query ID qstart qend Gene name e-value Function Identity Coverage Gene ID
NAFHDOBH_7256696373WalR7.65e-115transcriptional regulatory protein84.25100.00EPH95667
NAFHDOBH_4169667160CspR9.25e-31cold shock protein84.6198.48AAO82613
NAFHDOBH_4169667163CspA1.42e-30cold shock protein84.85100.00CAA62903

BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)

Plasmid


PlasmidFinder

Query ID Begin End Plasmid Query / Template Identity Accession no.
NAFHDOBH_5829093838rep28930 / 93097.74CP003162
NAFHDOBH_353819639097rep38903 / 90396.12CP005943
NAFHDOBH_4431764276repUS731101 / 110194.28CP002654

PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)

PlasmidHunter

Query ID Prediction Chromosome Plasmid
NAFHDOBH_110.01.00.0
NAFHDOBH_190.01.00.0
NAFHDOBH_200.01.00.0
NAFHDOBH_210.01.00.0
NAFHDOBH_220.01.00.0
NAFHDOBH_230.01.00.0
NAFHDOBH_240.01.00.0
NAFHDOBH_250.01.00.0
NAFHDOBH_260.01.00.0
NAFHDOBH_270.01.00.0
NAFHDOBH_280.01.00.0
NAFHDOBH_290.01.00.0
NAFHDOBH_300.01.00.0
NAFHDOBH_310.01.00.0
NAFHDOBH_320.01.00.0
NAFHDOBH_330.01.00.0
NAFHDOBH_340.01.00.0
NAFHDOBH_351.00.01.0
NAFHDOBH_360.01.00.0
NAFHDOBH_370.01.00.0
NAFHDOBH_380.01.00.0
NAFHDOBH_390.01.00.0
NAFHDOBH_401.00.01.0
NAFHDOBH_410.01.00.0
NAFHDOBH_420.01.00.0
NAFHDOBH_430.01.00.0
NAFHDOBH_441.00.01.0
NAFHDOBH_451.00.01.0
NAFHDOBH_460.01.00.0
NAFHDOBH_470.01.00.0
NAFHDOBH_481.00.01.0
NAFHDOBH_491.00.01.0
NAFHDOBH_500.01.00.0
NAFHDOBH_510.01.00.0
NAFHDOBH_520.01.00.0
NAFHDOBH_531.00.01.0
NAFHDOBH_541.00.01.0
NAFHDOBH_551.00.01.0
NAFHDOBH_561.00.01.0
NAFHDOBH_571.00.01.0
NAFHDOBH_581.00.01.0
NAFHDOBH_601.00.01.0
NAFHDOBH_610.01.00.0
NAFHDOBH_621.00.01.0
NAFHDOBH_641.00.01.0
NAFHDOBH_651.00.01.0
NAFHDOBH_661.00.01.0
NAFHDOBH_671.00.01.0
NAFHDOBH_681.00.01.0
NAFHDOBH_691.00.01.0
NAFHDOBH_701.00.01.0
NAFHDOBH_711.00.01.0
NAFHDOBH_720.01.00.0
NAFHDOBH_741.00.01.0
NAFHDOBH_751.00.01.0
NAFHDOBH_761.00.01.0
NAFHDOBH_830.01.00.0
NAFHDOBH_940.01.00.0
NAFHDOBH_1050.01.00.0
NAFHDOBH_1160.01.00.0

PlasmidHunter v 1.4.5 (Database: May. 2024 release)

Prophage


Phigaro

Query ID Begin End Transposable Taxonomy pVOGs
NAFHDOBH_34300514772FalseSiphoviridaeVOG6054, VOG6884, VOG0275, VOG0198, VOG0204, VOG4568, VOG4556, VOG2935, VOG4544, VOG4581, VOG4841, VOG0205
NAFHDOBH_361235736226FalseSiphoviridaeVOG0638, VOG0796, VOG10227, VOG0720, VOG4564, VOG3434, VOG1887, VOG4713, VOG0723, VOG9583, VOG0799, VOG0725, VOG1323, VOG3636, VOG6163, VOG3949, VOG0801, VOG3462, VOG3463, VOG8438, VOG0804, VOG4705, VOG3325, VOG0602
NAFHDOBH_3983974111324FalseSiphoviridaeVOG0044, VOG0044, VOG3643, VOG0198, VOG4581, VOG4544, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG0207, VOG4586, VOG0660, VOG4605, VOG4599, VOG10957, VOG8870, VOG0254, VOG9998

Phigaro v2.4.0 (Database: Jan. 2024 release)


Insertion sequence (IS) elements