Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| OJCLBHNN_22 | 369323 | 370027 | WalR | 2.47e-114 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| OJCLBHNN_44 | 126691 | 126885 | CspR | 1.24e-29 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| OJCLBHNN_44 | 126691 | 126888 | CspA | 1.90e-29 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| OJCLBHNN_13 | 5622 | 6557 | rep28 | 936 / 936 | 99.36 | CP005948 |
| OJCLBHNN_16 | 2249 | 3204 | repUS64 | 959 / 954 | 81.13 | JN601038 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| OJCLBHNN_1 | 0.0 | 1.0 | 0.0 |
| OJCLBHNN_2 | 0.0 | 1.0 | 0.0 |
| OJCLBHNN_3 | 0.0 | 1.0 | 0.0 |
| OJCLBHNN_4 | 0.0 | 1.0 | 0.0 |
| OJCLBHNN_5 | 0.0 | 1.0 | 0.0 |
| OJCLBHNN_6 | 0.0 | 1.0 | 0.0 |
| OJCLBHNN_7 | 1.0 | 0.0 | 1.0 |
| OJCLBHNN_8 | 0.0 | 1.0 | 0.0 |
| OJCLBHNN_9 | 0.0 | 1.0 | 0.0 |
| OJCLBHNN_10 | 0.0 | 1.0 | 0.0 |
| OJCLBHNN_11 | 0.0 | 1.0 | 0.0 |
| OJCLBHNN_12 | 0.0 | 1.0 | 0.0 |
| OJCLBHNN_13 | 1.0 | 0.0 | 1.0 |
| OJCLBHNN_14 | 0.0 | 1.0 | 0.0 |
| OJCLBHNN_15 | 1.0 | 0.0 | 1.0 |
| OJCLBHNN_16 | 1.0 | 0.0 | 1.0 |
| OJCLBHNN_22 | 0.0 | 1.0 | 0.0 |
| OJCLBHNN_30 | 0.0 | 1.0 | 0.0 |
| OJCLBHNN_41 | 0.0 | 1.0 | 0.0 |
| OJCLBHNN_44 | 0.0 | 1.0 | 0.0 |
| OJCLBHNN_45 | 0.0 | 1.0 | 0.0 |
| OJCLBHNN_46 | 0.0 | 1.0 | 0.0 |
| OJCLBHNN_47 | 0.0 | 1.0 | 0.0 |
| OJCLBHNN_48 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| OJCLBHNN_45 | 32079 | 62653 | False | Siphoviridae | VOG0321, VOG4548, VOG9667, VOG0322, VOG6545, VOG4632, VOG4609, VOG0327, VOG0159, VOG8310, VOG4673, VOG9281, VOG4844, VOG4556, VOG4573, VOG4553, VOG0562, VOG4589, VOG0539, VOG0704, VOG4586, VOG0541, VOG6163, VOG0801, VOG4619, VOG3498, VOG9997, VOG8917, VOG1637 |
Phigaro v2.4.0 (Database: Jan. 2024 release)