Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 0 | 0.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| MNEFLLOO_1 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| MNEFLLOO_1 | 461501 | 496578 | False | Siphoviridae | VOG0703, VOG5087, VOG0565, VOG0979, VOG9998, VOG10972, VOG4599, VOG4605, VOG6163, VOG0701, VOG9763, VOG0698, VOG0697, VOG0696, VOG0695, VOG3435, VOG4572, VOG4555, VOG0692, VOG0691, VOG4544, VOG0796, VOG0198, VOG0600, VOG4693, VOG0226, VOG0189, VOG4566, VOG0283, VOG9708, VOG0367, VOG8241, VOG9667, VOG0275, VOG9747, VOG0866 |
| MNEFLLOO_1 | 744436 | 780338 | False | Myoviridae | VOG0703, VOG9091, VOG0861, VOG4705, VOG4026, VOG7054, VOG4862, VOG4691, VOG3894, VOG4885, VOG4865, VOG5793, VOG3892, VOG3891, VOG3890, VOG5612, VOG4870, VOG1900, VOG3888, VOG4623, VOG4572, VOG4555, VOG4564, VOG0720, VOG0796, VOG0198, VOG6005, VOG0600, VOG4693, VOG4010, VOG9641, VOG5765, VOG0226, VOG0601, VOG0189, VOG4566, VOG0283, VOG10980, VOG0367, VOG4552, VOG0831, VOG5353, VOG6495, VOG0862 |
| MNEFLLOO_1 | 1351160 | 1355233 | False | Myoviridae | VOG4927, VOG4410, VOG6396 |
Phigaro v2.4.0 (Database: Jan. 2024 release)