Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| KCODIOJO_2 | 48632 | 49336 | WalR | 5.00e-115 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| KCODIOJO_37 | 7036 | 7230 | CspR | 9.12e-31 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| KCODIOJO_37 | 7036 | 7233 | CspA | 1.40e-30 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| KCODIOJO_58 | 5933 | 6868 | rep28 | 936 / 936 | 99.25 | CP005948 |
| KCODIOJO_67 | 642 | 1261 | repUS54 | 620 / 690 | 90.00 | EU185047 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| KCODIOJO_1 | 0.0 | 1.0 | 0.0 |
| KCODIOJO_2 | 0.0 | 1.0 | 0.0 |
| KCODIOJO_3 | 0.0 | 1.0 | 0.0 |
| KCODIOJO_4 | 0.0 | 1.0 | 0.0 |
| KCODIOJO_5 | 0.0 | 1.0 | 0.0 |
| KCODIOJO_6 | 0.0 | 1.0 | 0.0 |
| KCODIOJO_7 | 0.0 | 1.0 | 0.0 |
| KCODIOJO_8 | 0.0 | 1.0 | 0.0 |
| KCODIOJO_9 | 0.0 | 1.0 | 0.0 |
| KCODIOJO_10 | 0.0 | 1.0 | 0.0 |
| KCODIOJO_11 | 0.0 | 1.0 | 0.0 |
| KCODIOJO_12 | 0.0 | 1.0 | 0.0 |
| KCODIOJO_13 | 0.0 | 1.0 | 0.0 |
| KCODIOJO_14 | 0.0 | 1.0 | 0.0 |
| KCODIOJO_15 | 0.0 | 1.0 | 0.0 |
| KCODIOJO_16 | 0.0 | 1.0 | 0.0 |
| KCODIOJO_17 | 0.0 | 1.0 | 0.0 |
| KCODIOJO_18 | 0.0 | 1.0 | 0.0 |
| KCODIOJO_19 | 0.0 | 1.0 | 0.0 |
| KCODIOJO_20 | 0.0 | 1.0 | 0.0 |
| KCODIOJO_21 | 0.0 | 1.0 | 0.0 |
| KCODIOJO_22 | 0.0 | 1.0 | 0.0 |
| KCODIOJO_23 | 0.0 | 1.0 | 0.0 |
| KCODIOJO_24 | 0.0 | 1.0 | 0.0 |
| KCODIOJO_25 | 1.0 | 0.0 | 1.0 |
| KCODIOJO_26 | 0.0 | 1.0 | 0.0 |
| KCODIOJO_27 | 1.0 | 0.0 | 1.0 |
| KCODIOJO_28 | 0.0 | 1.0 | 0.0 |
| KCODIOJO_29 | 0.0 | 1.0 | 0.0 |
| KCODIOJO_30 | 0.0 | 1.0 | 0.0 |
| KCODIOJO_31 | 0.0 | 1.0 | 0.0 |
| KCODIOJO_32 | 0.0 | 1.0 | 0.0 |
| KCODIOJO_33 | 0.0 | 1.0 | 0.0 |
| KCODIOJO_34 | 0.0 | 1.0 | 0.0 |
| KCODIOJO_35 | 0.0 | 1.0 | 0.0 |
| KCODIOJO_36 | 1.0 | 0.0 | 1.0 |
| KCODIOJO_37 | 0.0 | 1.0 | 0.0 |
| KCODIOJO_38 | 0.0 | 1.0 | 0.0 |
| KCODIOJO_39 | 0.0 | 1.0 | 0.0 |
| KCODIOJO_40 | 1.0 | 0.0 | 1.0 |
| KCODIOJO_41 | 0.0 | 1.0 | 0.0 |
| KCODIOJO_42 | 0.0 | 1.0 | 0.0 |
| KCODIOJO_43 | 0.0 | 1.0 | 0.0 |
| KCODIOJO_44 | 0.0 | 1.0 | 0.0 |
| KCODIOJO_45 | 0.0 | 1.0 | 0.0 |
| KCODIOJO_46 | 1.0 | 0.0 | 1.0 |
| KCODIOJO_47 | 0.0 | 1.0 | 0.0 |
| KCODIOJO_48 | 0.0 | 1.0 | 0.0 |
| KCODIOJO_49 | 0.0 | 1.0 | 0.0 |
| KCODIOJO_50 | 0.0 | 1.0 | 0.0 |
| KCODIOJO_51 | 1.0 | 0.0 | 1.0 |
| KCODIOJO_52 | 0.0 | 1.0 | 0.0 |
| KCODIOJO_53 | 1.0 | 0.0 | 1.0 |
| KCODIOJO_54 | 0.0 | 1.0 | 0.0 |
| KCODIOJO_55 | 0.0 | 1.0 | 0.0 |
| KCODIOJO_56 | 1.0 | 0.0 | 1.0 |
| KCODIOJO_57 | 0.0 | 1.0 | 0.0 |
| KCODIOJO_58 | 1.0 | 0.0 | 1.0 |
| KCODIOJO_59 | 0.0 | 1.0 | 0.0 |
| KCODIOJO_60 | 1.0 | 0.0 | 1.0 |
| KCODIOJO_61 | 1.0 | 0.0 | 1.0 |
| KCODIOJO_62 | 0.0 | 1.0 | 0.0 |
| KCODIOJO_63 | 1.0 | 0.0 | 1.0 |
| KCODIOJO_64 | 1.0 | 0.0 | 1.0 |
| KCODIOJO_65 | 0.0 | 1.0 | 0.0 |
| KCODIOJO_66 | 0.0 | 1.0 | 0.0 |
| KCODIOJO_67 | 1.0 | 0.0 | 1.0 |
| KCODIOJO_68 | 1.0 | 0.0 | 1.0 |
| KCODIOJO_69 | 1.0 | 0.0 | 1.0 |
| KCODIOJO_70 | 1.0 | 0.0 | 1.0 |
| KCODIOJO_72 | 1.0 | 0.0 | 1.0 |
| KCODIOJO_73 | 1.0 | 0.0 | 1.0 |
| KCODIOJO_74 | 0.0 | 1.0 | 0.0 |
| KCODIOJO_75 | 0.0 | 1.0 | 0.0 |
| KCODIOJO_76 | 1.0 | 0.0 | 1.0 |
| KCODIOJO_77 | 0.0 | 1.0 | 0.0 |
| KCODIOJO_78 | 1.0 | 0.0 | 1.0 |
| KCODIOJO_79 | 1.0 | 0.0 | 1.0 |
| KCODIOJO_80 | 1.0 | 0.0 | 1.0 |
| KCODIOJO_81 | 1.0 | 0.0 | 1.0 |
| KCODIOJO_83 | 0.0 | 1.0 | 0.0 |
| KCODIOJO_84 | 0.0 | 1.0 | 0.0 |
| KCODIOJO_85 | 1.0 | 0.0 | 1.0 |
| KCODIOJO_86 | 1.0 | 0.0 | 1.0 |
| KCODIOJO_87 | 1.0 | 0.0 | 1.0 |
| KCODIOJO_88 | 0.0 | 1.0 | 0.0 |
| KCODIOJO_89 | 1.0 | 0.0 | 1.0 |
| KCODIOJO_90 | 1.0 | 0.0 | 1.0 |
| KCODIOJO_92 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| KCODIOJO_11 | 230680 | 255072 | False | Siphoviridae | VOG0514, VOG4566, VOG0189, VOG11024, VOG4693, VOG4010, VOG0198, VOG4841, VOG4581, VOG1886, VOG7540, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG9583, VOG0207, VOG4586, VOG5852, VOG0660, VOG5631, VOG4605 |
| KCODIOJO_17 | 2012 | 29908 | False | Siphoviridae | VOG4545, VOG1334, VOG1333, VOG4634, VOG0704, VOG1330, VOG4713, VOG1887, VOG3434, VOG10914, VOG4564, VOG0720, VOG4544, VOG0796, VOG0045, VOG3015, VOG0198, VOG0586, VOG4693, VOG4552, VOG4566, VOG0186, VOG1309, VOG2703, VOG7298, VOG0181, VOG9655, VOG6495 |
| KCODIOJO_33 | 26692 | 30136 | True | Siphoviridae | VOG8916, VOG8916, VOG6495, VOG6495, VOG4602, VOG9312 |
Phigaro v2.4.0 (Database: Jan. 2024 release)