Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| AALPOJJB_1 | 2869699 | 2868995 | WalR | 2.18e-111 | transcriptional regulatory protein | 83.40 | 100.00 | EPH95667 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| AALPOJJB_4 | 11964 | 13025 | repUS74 | 1063 / 1062 | 95.77 | CP000424 |
| AALPOJJB_6 | 8431 | 8966 | repUS54 | 539 / 690 | 84.23 | EU185047 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| AALPOJJB_1 | 0.0 | 1.0 | 0.0 |
| AALPOJJB_2 | 1.0 | 0.0 | 1.0 |
| AALPOJJB_3 | 1.0 | 0.0 | 1.0 |
| AALPOJJB_4 | 1.0 | 0.0 | 1.0 |
| AALPOJJB_5 | 1.0 | 0.0 | 1.0 |
| AALPOJJB_6 | 1.0 | 0.0 | 1.0 |
| AALPOJJB_7 | 1.0 | 0.0 | 1.0 |
| AALPOJJB_8 | 1.0 | 0.0 | 1.0 |
| AALPOJJB_9 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| AALPOJJB_1 | 496301 | 505096 | True | Unknown | VOG5088, VOG0198, VOG5088, VOG5088, VOG4570 |
| AALPOJJB_1 | 1115280 | 1150674 | False | Siphoviridae | VOG1309, VOG0186, VOG4855, VOG0226, VOG5640, VOG11003, VOG9860, VOG6623, VOG4693, VOG6238, VOG2820, VOG3643, VOG1563, VOG0198, VOG2545, VOG0376, VOG4570, VOG4549, VOG0796, VOG4544, VOG0720, VOG4564, VOG4555, VOG1329, VOG4713, VOG0723, VOG5660, VOG0724, VOG0799, VOG0725, VOG0800, VOG4545, VOG4605, VOG4605, VOG4599, VOG7888, VOG0054, VOG4918, VOG4602 |
Phigaro v2.4.0 (Database: Jan. 2024 release)