Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| EJNMCCCI_200 | 105721 | 106425 | WalR | 1.02e-114 | transcriptional regulatory protein | 83.83 | 100.00 | EPH95667 |
| EJNMCCCI_155 | 7123 | 7317 | CspR | 9.34e-31 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| EJNMCCCI_155 | 7123 | 7320 | CspA | 1.43e-30 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| EJNMCCCI_8 | 0.0 | 1.0 | 0.0 |
| EJNMCCCI_17 | 0.0 | 1.0 | 0.0 |
| EJNMCCCI_23 | 0.0 | 1.0 | 0.0 |
| EJNMCCCI_30 | 0.0 | 1.0 | 0.0 |
| EJNMCCCI_37 | 0.0 | 1.0 | 0.0 |
| EJNMCCCI_45 | 0.0 | 1.0 | 0.0 |
| EJNMCCCI_53 | 0.0 | 1.0 | 0.0 |
| EJNMCCCI_56 | 0.0 | 1.0 | 0.0 |
| EJNMCCCI_64 | 0.0 | 1.0 | 0.0 |
| EJNMCCCI_69 | 0.0 | 1.0 | 0.0 |
| EJNMCCCI_70 | 0.0 | 1.0 | 0.0 |
| EJNMCCCI_74 | 0.0 | 1.0 | 0.0 |
| EJNMCCCI_80 | 0.0 | 1.0 | 0.0 |
| EJNMCCCI_87 | 0.0 | 1.0 | 0.0 |
| EJNMCCCI_96 | 0.0 | 1.0 | 0.0 |
| EJNMCCCI_103 | 0.0 | 1.0 | 0.0 |
| EJNMCCCI_110 | 0.0 | 1.0 | 0.0 |
| EJNMCCCI_116 | 0.0 | 1.0 | 0.0 |
| EJNMCCCI_125 | 0.0 | 1.0 | 0.0 |
| EJNMCCCI_134 | 0.0 | 1.0 | 0.0 |
| EJNMCCCI_142 | 0.0 | 1.0 | 0.0 |
| EJNMCCCI_143 | 0.0 | 1.0 | 0.0 |
| EJNMCCCI_150 | 0.0 | 1.0 | 0.0 |
| EJNMCCCI_155 | 0.0 | 1.0 | 0.0 |
| EJNMCCCI_165 | 0.0 | 1.0 | 0.0 |
| EJNMCCCI_172 | 0.0 | 1.0 | 0.0 |
| EJNMCCCI_176 | 0.0 | 1.0 | 0.0 |
| EJNMCCCI_178 | 1.0 | 0.0 | 1.0 |
| EJNMCCCI_180 | 1.0 | 0.0 | 1.0 |
| EJNMCCCI_182 | 0.0 | 1.0 | 0.0 |
| EJNMCCCI_191 | 0.0 | 1.0 | 0.0 |
| EJNMCCCI_200 | 0.0 | 1.0 | 0.0 |
| EJNMCCCI_209 | 0.0 | 1.0 | 0.0 |
| EJNMCCCI_216 | 0.0 | 1.0 | 0.0 |
| EJNMCCCI_222 | 0.0 | 1.0 | 0.0 |
| EJNMCCCI_229 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| EJNMCCCI_143 | 11456 | 41330 | False | Siphoviridae | VOG4567, VOG0044, VOG0198, VOG4841, VOG4581, VOG1886, VOG7540, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG9583, VOG0207, VOG4586, VOG5852, VOG0660, VOG5631, VOG4605, VOG4599, VOG10957, VOG8870, VOG0254, VOG9998, VOG10957, VOG4615, VOG0753, VOG1521 |
| EJNMCCCI_143 | 306043 | 340488 | False | Siphoviridae | VOG0535, VOG0322, VOG6545, VOG5046, VOG0189, VOG6005, VOG0198, VOG6495, VOG2124, VOG3699, VOG10227, VOG0720, VOG4564, VOG10914, VOG1329, VOG4713, VOG9583, VOG0724, VOG0799, VOG0725, VOG6163, VOG4633, VOG4599, VOG4619, VOG4856, VOG9640, VOG0804, VOG4705, VOG4918, VOG0753, VOG0054, VOG0866 |
| EJNMCCCI_216 | 29093 | 62842 | False | Siphoviridae | VOG1563, VOG8222, VOG8925, VOG6495, VOG0321, VOG4548, VOG6394, VOG0322, VOG6545, VOG4632, VOG4609, VOG0327, VOG0586, VOG1183, VOG1049, VOG4673, VOG3685, VOG6154, VOG4844, VOG4556, VOG4573, VOG4553, VOG0562, VOG4589, VOG0539, VOG0704, VOG4586, VOG0541, VOG6163, VOG0801, VOG4619, VOG3498, VOG9997, VOG8917, VOG9888 |
Phigaro v2.4.0 (Database: Jan. 2024 release)