Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 0 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| HLDDABII_1 | 1995203 | 1997125 | tet(W) | ARO:3000194 | tet(W) | 96.39 | 100.16 | AJ222769.3 |
| HLDDABII_3 | 21027 | 22454 | fexA | ARO:3002704 | fexA | 97.68 | 100.00 | AJ549214.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| HLDDABII_3 | 21027 | 22454 | fexA | Chloramphenicol, Florfenicol | 99.16 | 100.00 | AJ549214 |
| HLDDABII_1 | 1995203 | 1997115 | tet(W) | Doxycycline, Tetracycline, Minocycline | 98.85 | 99.64 | FN396364 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| HLDDABII_1 | 1995203 | 1997116 | tet(W) | tetracycline resistance ribosomal protection protein Tet(W) | BLASTX | 99.06 | 99.84 | WP_000691721.1 |
| HLDDABII_3 | 21027 | 22451 | fexA | chloramphenicol/florfenicol efflux MFS transporter FexA | BLASTX | 97.68 | 100.00 | WP_015585966.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| HLDDABII_3 | 12047 | 12823 | rep30 | 777 / 777 | 99.61 | CP006013 |
| HLDDABII_4 | 10036 | 11074 | repUS67 | 1041 / 1039 | 94.52 | CP006012 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| HLDDABII_1 | 0.0 | 1.0 | 0.0 |
| HLDDABII_2 | 1.0 | 0.0 | 1.0 |
| HLDDABII_3 | 1.0 | 0.0 | 1.0 |
| HLDDABII_4 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| HLDDABII_1 | 540630 | 568023 | True | Siphoviridae | VOG10174, VOG0221, VOG0221, VOG0641, VOG4589, VOG0204, VOG4553, VOG4573, VOG4556, VOG4544, VOG4571, VOG4581, VOG0198, VOG4548, VOG0327, VOG4606, VOG0026, VOG0021, VOG1047, VOG7438, VOG0052 |
| HLDDABII_1 | 1176817 | 1223476 | False | Siphoviridae | VOG4865, VOG0054, VOG1637, VOG0065, VOG5008, VOG4856, VOG4856, VOG3462, VOG0801, VOG6163, VOG9471, VOG2225, VOG4586, VOG0704, VOG0539, VOG4589, VOG0204, VOG4553, VOG4568, VOG4556, VOG0202, VOG4544, VOG4581, VOG4841, VOG0866, VOG0198, VOG1183, VOG6495, VOG0686, VOG0327, VOG4609, VOG4632, VOG4632, VOG6545, VOG0052, VOG0322, VOG0322, VOG4548, VOG0321, VOG5878, VOG3478, VOG8520, VOG8520, VOG4602, VOG1993, VOG9030, VOG0774, VOG0275, VOG4865, VOG0054, VOG1637, VOG0065 |
| HLDDABII_1 | 1300001 | 1312134 | True | Siphoviridae | VOG4237, VOG8353, VOG4995, VOG4552, VOG4237, VOG9667, VOG4821, VOG8387, VOG0944, VOG0944, VOG9231, VOG0275, VOG2054, VOG0918 |
| HLDDABII_4 | 15007 | 27162 | False | Unknown | VOG5088, VOG5461, VOG0377, VOG5721, VOG6031, VOG6524, VOG6246, VOG5088 |
Phigaro v2.4.0 (Database: Jan. 2024 release)