Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 4 | 0 | 0 | 4.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CMDMEEHG_1 | 2200256 | 2203582 | Bifidobacterium bifidum ileS conferring resistance to mupirocin | ARO:3003730 | Bbif_ileS_MUP | 99.19 | 100.09 | CP001840.1 |
| CMDMEEHG_1 | 1080391 | 1083954 | Bifidobacterium adolescentis rpoB mutants conferring resistance to rifampicin | ARO:3004480 | Bado_rpoB_RIF | 91.30 | 100.08 | NC_008618.1 |
| CMDMEEHG_1 | 1064110 | 1065975 | tet(W) | ARO:3000194 | tet(W) | 98.87 | 97.18 | AJ222769.3 |
| CMDMEEHG_1 | 789509 | 790363 | ErmX | ARO:3000596 | ErmX | 90.14 | 100.00 | M36726.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| CMDMEEHG_1 | 789509 | 790271 | erm(X) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.74 | 100.00 | U21300 |
| CMDMEEHG_1 | 1064056 | 1065975 | tet(W) | Doxycycline, Tetracycline, Minocycline | 99.48 | 100.00 | AJ427422 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CMDMEEHG_1 | 789509 | 790360 | erm(X) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(X) | BLASTX | 99.65 | 100.00 | WP_011117480.1 |
| CMDMEEHG_1 | 1064056 | 1065972 | tet(W) | tetracycline resistance ribosomal protection protein Tet(W) | BLASTX | 99.06 | 100.00 | WP_002586627.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| CMDMEEHG_1 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| CMDMEEHG_1 | 573187 | 581289 | True | Unknown | VOG0275, VOG0944, VOG0945, VOG0159 |
| CMDMEEHG_1 | 686973 | 708922 | False | Siphoviridae | VOG0992, VOG0136, VOG0991, VOG0275, VOG3654, VOG4545, VOG4582, VOG3651, VOG4557, VOG4621, VOG1159, VOG3409, VOG1581, VOG0880, VOG4553, VOG4555, VOG4576, VOG0720, VOG4544, VOG1574, VOG0183, VOG1422, VOG9852 |
| CMDMEEHG_1 | 716118 | 722966 | False | Siphoviridae | VOG1229, VOG4944, VOG4602, VOG4821, VOG10617, VOG0275 |
| CMDMEEHG_1 | 1519192 | 1540824 | True | Myoviridae | VOG0275, VOG0275, VOG5088, VOG0083, VOG3239, VOG3594, VOG5532, VOG0944, VOG0275, VOG0275, VOG0275, VOG0944, VOG5532 |
| CMDMEEHG_1 | 1658435 | 1676005 | False | Siphoviridae | VOG0943, VOG2538, VOG2038, VOG4841, VOG9852, VOG2560, VOG5101, VOG0720, VOG4576, VOG4553, VOG0880, VOG1581, VOG5601 |
| CMDMEEHG_1 | 1946483 | 1954169 | False | Siphoviridae | VOG5395, VOG4602, VOG0010, VOG3304, VOG0585, VOG11075 |
| CMDMEEHG_1 | 2033121 | 2050734 | False | Myoviridae | VOG0384, VOG4548, VOG5689, VOG0382, VOG0052, VOG8190 |
Phigaro v2.4.0 (Database: Jan. 2024 release)