Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| GOGNHLOE_1 | 67659 | 67856 | CspA | 3.06e-29 | cold shock protein | 86.36 | 100.00 | CAA62903 |
| GOGNHLOE_1 | 67659 | 67853 | CspR | 2.61e-27 | cold shock protein | 83.08 | 98.48 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| GOGNHLOE_1 | 0.0 | 1.0 | 0.0 |
| GOGNHLOE_2 | 0.0 | 1.0 | 0.0 |
| GOGNHLOE_3 | 0.0 | 1.0 | 0.0 |
| GOGNHLOE_4 | 0.0 | 1.0 | 0.0 |
| GOGNHLOE_5 | 0.0 | 1.0 | 0.0 |
| GOGNHLOE_6 | 0.0 | 1.0 | 0.0 |
| GOGNHLOE_7 | 0.0 | 1.0 | 0.0 |
| GOGNHLOE_8 | 0.0 | 1.0 | 0.0 |
| GOGNHLOE_9 | 0.0 | 1.0 | 0.0 |
| GOGNHLOE_10 | 0.0 | 1.0 | 0.0 |
| GOGNHLOE_11 | 0.0 | 1.0 | 0.0 |
| GOGNHLOE_12 | 1.0 | 0.0 | 1.0 |
| GOGNHLOE_13 | 0.0 | 1.0 | 0.0 |
| GOGNHLOE_14 | 0.0 | 1.0 | 0.0 |
| GOGNHLOE_15 | 0.0 | 1.0 | 0.0 |
| GOGNHLOE_16 | 0.0 | 1.0 | 0.0 |
| GOGNHLOE_17 | 0.0 | 1.0 | 0.0 |
| GOGNHLOE_18 | 0.0 | 1.0 | 0.0 |
| GOGNHLOE_19 | 0.0 | 1.0 | 0.0 |
| GOGNHLOE_20 | 0.0 | 1.0 | 0.0 |
| GOGNHLOE_21 | 0.0 | 1.0 | 0.0 |
| GOGNHLOE_22 | 1.0 | 0.0 | 1.0 |
| GOGNHLOE_23 | 0.0 | 1.0 | 0.0 |
| GOGNHLOE_24 | 0.0 | 1.0 | 0.0 |
| GOGNHLOE_25 | 0.0 | 1.0 | 0.0 |
| GOGNHLOE_26 | 0.0 | 1.0 | 0.0 |
| GOGNHLOE_27 | 0.0 | 1.0 | 0.0 |
| GOGNHLOE_28 | 0.0 | 1.0 | 0.0 |
| GOGNHLOE_29 | 0.0 | 1.0 | 0.0 |
| GOGNHLOE_30 | 0.0 | 1.0 | 0.0 |
| GOGNHLOE_31 | 0.0 | 1.0 | 0.0 |
| GOGNHLOE_32 | 0.0 | 1.0 | 0.0 |
| GOGNHLOE_33 | 0.0 | 1.0 | 0.0 |
| GOGNHLOE_34 | 1.0 | 0.0 | 1.0 |
| GOGNHLOE_35 | 0.0 | 1.0 | 0.0 |
| GOGNHLOE_36 | 0.0 | 1.0 | 0.0 |
| GOGNHLOE_37 | 0.0 | 1.0 | 0.0 |
| GOGNHLOE_38 | 0.0 | 1.0 | 0.0 |
| GOGNHLOE_39 | 0.0 | 1.0 | 0.0 |
| GOGNHLOE_40 | 0.0 | 1.0 | 0.0 |
| GOGNHLOE_41 | 0.0 | 1.0 | 0.0 |
| GOGNHLOE_42 | 0.0 | 1.0 | 0.0 |
| GOGNHLOE_43 | 0.0 | 1.0 | 0.0 |
| GOGNHLOE_44 | 0.0 | 1.0 | 0.0 |
| GOGNHLOE_45 | 0.0 | 1.0 | 0.0 |
| GOGNHLOE_46 | 0.0 | 1.0 | 0.0 |
| GOGNHLOE_47 | 0.0 | 1.0 | 0.0 |
| GOGNHLOE_48 | 0.0 | 1.0 | 0.0 |
| GOGNHLOE_49 | 0.0 | 1.0 | 0.0 |
| GOGNHLOE_50 | 0.0 | 1.0 | 0.0 |
| GOGNHLOE_51 | 0.0 | 1.0 | 0.0 |
| GOGNHLOE_52 | 0.0 | 1.0 | 0.0 |
| GOGNHLOE_53 | 0.0 | 1.0 | 0.0 |
| GOGNHLOE_54 | 1.0 | 0.0 | 1.0 |
| GOGNHLOE_55 | 0.0 | 1.0 | 0.0 |
| GOGNHLOE_56 | 1.0 | 0.0 | 1.0 |
| GOGNHLOE_57 | 0.0 | 1.0 | 0.0 |
| GOGNHLOE_58 | 0.0 | 1.0 | 0.0 |
| GOGNHLOE_59 | 0.0 | 1.0 | 0.0 |
| GOGNHLOE_60 | 0.0 | 1.0 | 0.0 |
| GOGNHLOE_61 | 0.0 | 1.0 | 0.0 |
| GOGNHLOE_62 | 0.0 | 1.0 | 0.0 |
| GOGNHLOE_63 | 0.0 | 1.0 | 0.0 |
| GOGNHLOE_64 | 1.0 | 0.0 | 1.0 |
| GOGNHLOE_65 | 0.0 | 1.0 | 0.0 |
| GOGNHLOE_66 | 0.0 | 1.0 | 0.0 |
| GOGNHLOE_67 | 0.0 | 1.0 | 0.0 |
| GOGNHLOE_68 | 1.0 | 0.0 | 1.0 |
| GOGNHLOE_69 | 1.0 | 0.0 | 1.0 |
| GOGNHLOE_70 | 0.0 | 1.0 | 0.0 |
| GOGNHLOE_71 | 1.0 | 0.0 | 1.0 |
| GOGNHLOE_72 | 0.0 | 1.0 | 0.0 |
| GOGNHLOE_73 | 1.0 | 0.0 | 1.0 |
| GOGNHLOE_74 | 0.0 | 1.0 | 0.0 |
| GOGNHLOE_75 | 1.0 | 0.0 | 1.0 |
| GOGNHLOE_76 | 0.0 | 1.0 | 0.0 |
| GOGNHLOE_77 | 1.0 | 0.0 | 1.0 |
| GOGNHLOE_78 | 1.0 | 0.0 | 1.0 |
| GOGNHLOE_79 | 1.0 | 0.0 | 1.0 |
| GOGNHLOE_80 | 1.0 | 0.0 | 1.0 |
| GOGNHLOE_81 | 1.0 | 0.0 | 1.0 |
| GOGNHLOE_82 | 1.0 | 0.0 | 1.0 |
| GOGNHLOE_83 | 0.0 | 1.0 | 0.0 |
| GOGNHLOE_84 | 1.0 | 0.0 | 1.0 |
| GOGNHLOE_85 | 1.0 | 0.0 | 1.0 |
| GOGNHLOE_86 | 1.0 | 0.0 | 1.0 |
| GOGNHLOE_89 | 1.0 | 0.0 | 1.0 |
| GOGNHLOE_90 | 1.0 | 0.0 | 1.0 |
| GOGNHLOE_91 | 1.0 | 0.0 | 1.0 |
| GOGNHLOE_92 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| GOGNHLOE_12 | 9470 | 11605 | False | Myoviridae | VOG8685, VOG4693, VOG3307, VOG4122 |
| GOGNHLOE_12 | 15600 | 40960 | False | Siphoviridae | VOG0044, VOG8625, VOG0198, VOG1446, VOG0198, VOG3349, VOG5453, VOG1854, VOG3349, VOG4841, VOG4581, VOG4544, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG0207, VOG4586, VOG6698, VOG8263, VOG0801 |
| GOGNHLOE_30 | 5518 | 15352 | False | Myoviridae / Siphoviridae | VOG4999, VOG8353, VOG2185, VOG4025, VOG0198, VOG4573 |
Phigaro v2.4.0 (Database: Jan. 2024 release)