Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 7 | 0 | 0 | 7.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| JJBEOAAP_1 | 1928169 | 1928906 | ErmB | ARO:3000375 | ErmB | 100.00 | 98.79 | AF242872.1 |
| JJBEOAAP_1 | 1926814 | 1927458 | vatE | ARO:3002844 | vatE | 100.00 | 100.00 | AF242872.1 |
| JJBEOAAP_1 | 1071554 | 1073239 | tet(O) | ARO:3000190 | tet(O) | 98.04 | 87.79 | M18896.2 |
| JJBEOAAP_1 | 1069961 | 1071334 | tet(L) | ARO:3000179 | tet(L) | 98.45 | 99.78 | M11036.1 |
| JJBEOAAP_1 | 1067863 | 1069782 | tet(O/W/32/O) | ARO:3007122 | tet(O/W/32/O) | 99.69 | 100.00 | DQ525023.1 |
| JJBEOAAP_1 | 87734 | 89143 | fexB | ARO:3007019 | fexB | 99.57 | 100.00 | JN201336.1 |
| JJBEOAAP_1 | 82408 | 84036 | poxtA | ARO:3004470 | poxtA | 99.45 | 100.00 | MF095097.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| JJBEOAAP_1 | 1926814 | 1927458 | vat(E) | Dalfopristin, Pristinamycin IIA, Virginiamycin M | 100.00 | 100.00 | AJ488494 |
| JJBEOAAP_1 | 1928161 | 1928906 | erm(B) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.87 | 99.87 | AF242872 |
| JJBEOAAP_1 | 87734 | 89143 | fexB | Chloramphenicol, Florfenicol | 99.86 | 100.00 | JN201336 |
| JJBEOAAP_1 | 82408 | 84036 | poxtA | Chloramphenicol, Florfenicol, Linezolid, Doxycycline, Tetracycline | 99.82 | 100.00 | MF095097 |
| JJBEOAAP_1 | 1067863 | 1069782 | tet(O/W/32/O/W/O) | Doxycycline, Tetracycline, Minocycline | 99.64 | 100.00 | DQ525023 |
| JJBEOAAP_1 | 1071519 | 1073239 | tet(O) | Doxycycline, Tetracycline, Minocycline | 99.54 | 89.64 | Y07780 |
| JJBEOAAP_1 | 1069971 | 1071334 | tet(L) | Doxycycline, Tetracycline, Minocycline, Tigecycline, Doxycycline, Tetracycline | 98.61 | 99.06 | M29725 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| JJBEOAAP_1 | 1926817 | 1927458 | vat(E) | streptogramin A O-acetyltransferase Vat(E) | EXACTX | 100.00 | 100.00 | WP_002328813.1 |
| JJBEOAAP_1 | 1928172 | 1928906 | erm(B) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B) | BLASTX | 100.00 | 98.79 | WP_032489723.1 |
| JJBEOAAP_1 | 1067863 | 1069779 | tet(O/W/32/O) | tetracycline resistance ribosomal protection mosaic protein Tet(O/W/32/O) | BLASTX | 99.69 | 100.00 | WP_063856419.1 |
| JJBEOAAP_1 | 87734 | 89140 | fexB | chloramphenicol/florfenicol efflux MFS transporter FexB | BLASTX | 99.57 | 100.00 | WP_002415211.1 |
| JJBEOAAP_1 | 82411 | 84036 | poxtA | ABC-F type ribosomal protection protein PoxtA | BLASTX | 99.45 | 100.00 | WP_002415638.1 |
| JJBEOAAP_1 | 1071515 | 1073236 | tet(O) | tetracycline resistance ribosomal protection protein Tet(O) | PARTIALX | 99.13 | 89.83 | WP_014636291.1 |
| JJBEOAAP_1 | 1069973 | 1071331 | tet(L) | tetracycline efflux MFS transporter Tet(L) | BLASTX | 98.68 | 98.91 | WP_001574277.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| JJBEOAAP_1 | 0.0 | 1.0 | 0.0 |
| JJBEOAAP_2 | 1.0 | 0.0 | 1.0 |
| JJBEOAAP_3 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| JJBEOAAP_1 | 916205 | 953961 | False | Siphoviridae | VOG1834, VOG9708, VOG0322, VOG6394, VOG4548, VOG6545, VOG4606, VOG0275, VOG0195, VOG0635, VOG5545, VOG3307, VOG0635, VOG0634, VOG4567, VOG0327, VOG10904, VOG6005, VOG4966, VOG0198, VOG4841, VOG4581, VOG1886, VOG0202, VOG4556, VOG4573, VOG4553, VOG0204, VOG10939, VOG0207, VOG4586, VOG0209, VOG0660, VOG4545, VOG4633, VOG4659, VOG4612, VOG9945, VOG4705, VOG0861 |
| JJBEOAAP_1 | 973281 | 1006041 | False | Siphoviridae | VOG9667, VOG4552, VOG7888, VOG0943, VOG4995, VOG0685, VOG0283, VOG5046, VOG6430, VOG0635, VOG4693, VOG0198, VOG1345, VOG0796, VOG4544, VOG0720, VOG7038, VOG4564, VOG4555, VOG3434, VOG1887, VOG4713, VOG1330, VOG1900, VOG0704, VOG4634, VOG1333, VOG1334, VOG6163, VOG1335, VOG10608, VOG5007, VOG0648, VOG0861, VOG7017 |
| JJBEOAAP_1 | 1230336 | 1254131 | False | Siphoviridae | VOG0612, VOG4544, VOG0691, VOG0692, VOG4555, VOG1329, VOG0695, VOG0696, VOG0697, VOG0698, VOG9763, VOG0701, VOG4760, VOG0801, VOG4619, VOG5859, VOG0861, VOG9888, VOG0686, VOG0703 |
Phigaro v2.4.0 (Database: Jan. 2024 release)