Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 4 | 4.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| GGNJOBJM_2 | 56598 | 55447 | tufA | 0.0 | elongation factor Tu | 86.46 | 97.21 | AHM69299 |
| GGNJOBJM_2 | 106399 | 105530 | pdxS | 8.31e-152 | encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS | 83.79 | 98.31 | ACE61268 |
| GGNJOBJM_1 | 1028157 | 1028933 | CodY | 4.26e-126 | nutrient-responsive regulator | 81.47 | 100.00 | ACJ80679 |
| GGNJOBJM_1 | 1028157 | 1028933 | codY | 1.03e-122 | global regulator and isoleucine sensor | 80.31 | 100.00 | ASW39076 |
| GGNJOBJM_1 | 673272 | 672703 | ClpP | 1.34e-102 | part of proteolytic complex | 83.68 | 97.44 | BAB94595 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| GGNJOBJM_1 | 0.0 | 1.0 | 0.0 |
| GGNJOBJM_2 | 0.0 | 1.0 | 0.0 |
| GGNJOBJM_3 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| GGNJOBJM_3 | 6434 | 33456 | False | Siphoviridae | VOG0136, VOG0459, VOG6965, VOG3498, VOG4763, VOG4599, VOG10904, VOG4605, VOG3379, VOG0701, VOG10044, VOG7238, VOG0698, VOG0697, VOG0696, VOG0695, VOG5007, VOG4572, VOG9317, VOG1183, VOG1183, VOG0692, VOG0691, VOG10227, VOG0796, VOG3412, VOG0198 |
| GGNJOBJM_3 | 41784 | 49473 | False | Siphoviridae | VOG0397, VOG9996, VOG0189, VOG4799, VOG1309, VOG4600, VOG1879, VOG1878, VOG3549, VOG8241 |
Phigaro v2.4.0 (Database: Jan. 2024 release)