Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| JLFEOPGL_1 | 271802 | 272506 | WalR | 2.12e-111 | transcriptional regulatory protein | 83.40 | 100.00 | EPH95667 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| JLFEOPGL_1 | 0.0 | 1.0 | 0.0 |
| JLFEOPGL_2 | 1.0 | 0.0 | 1.0 |
| JLFEOPGL_3 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| JLFEOPGL_1 | 189106 | 200117 | False | Siphoviridae | VOG4589, VOG0204, VOG4568, VOG4556, VOG5051, VOG4544, VOG4581, VOG4609, VOG4632, VOG1581 |
| JLFEOPGL_1 | 1127284 | 1165782 | False | Siphoviridae | VOG6495, VOG6880, VOG1309, VOG0186, VOG4566, VOG0226, VOG8987, VOG11003, VOG9860, VOG0536, VOG4567, VOG2820, VOG4994, VOG3643, VOG3643, VOG0044, VOG9280, VOG3307, VOG0198, VOG4570, VOG0796, VOG10227, VOG0720, VOG4564, VOG5616, VOG4555, VOG0694, VOG1322, VOG4713, VOG1320, VOG9583, VOG1321, VOG0799, VOG0725, VOG1323, VOG0801, VOG4619, VOG4856, VOG0861, VOG7017, VOG0602, VOG4649, VOG0979 |
| JLFEOPGL_1 | 2218051 | 2255898 | False | Siphoviridae | VOG4918, VOG0703, VOG1637, VOG7896, VOG6455, VOG4599, VOG4599, VOG4605, VOG6163, VOG0660, VOG0209, VOG4586, VOG0207, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556, VOG7540, VOG1886, VOG4581, VOG4841, VOG1345, VOG4549, VOG4570, VOG0198, VOG9759, VOG0327, VOG4606, VOG6545, VOG3777, VOG4548, VOG0322, VOG0321, VOG3642, VOG4967, VOG10867, VOG0181, VOG4552, VOG5353, VOG8520, VOG0862, VOG6820, VOG0982, VOG5532 |
Phigaro v2.4.0 (Database: Jan. 2024 release)