Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| PEPFKLOM_156 | 67184 | 67888 | WalR | 4.73e-115 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| PEPFKLOM_227 | 1882 | 1688 | CspR | 3.88e-31 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| PEPFKLOM_227 | 1882 | 1685 | CspA | 5.95e-31 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| PEPFKLOM_42 | 969 | 1922 | repUS64 | 954 / 954 | 97.59 | JN601038 |
| PEPFKLOM_215 | 3626 | 4555 | rep28 | 930 / 930 | 97.42 | CP003162 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| PEPFKLOM_1 | 0.0 | 1.0 | 0.0 |
| PEPFKLOM_2 | 0.0 | 1.0 | 0.0 |
| PEPFKLOM_3 | 0.0 | 1.0 | 0.0 |
| PEPFKLOM_4 | 0.0 | 1.0 | 0.0 |
| PEPFKLOM_5 | 0.0 | 1.0 | 0.0 |
| PEPFKLOM_6 | 0.0 | 1.0 | 0.0 |
| PEPFKLOM_7 | 1.0 | 0.0 | 1.0 |
| PEPFKLOM_8 | 1.0 | 0.0 | 1.0 |
| PEPFKLOM_9 | 1.0 | 0.0 | 1.0 |
| PEPFKLOM_10 | 1.0 | 0.0 | 1.0 |
| PEPFKLOM_11 | 0.0 | 1.0 | 0.0 |
| PEPFKLOM_12 | 0.0 | 1.0 | 0.0 |
| PEPFKLOM_13 | 0.0 | 1.0 | 0.0 |
| PEPFKLOM_14 | 0.0 | 1.0 | 0.0 |
| PEPFKLOM_15 | 0.0 | 1.0 | 0.0 |
| PEPFKLOM_16 | 1.0 | 0.0 | 1.0 |
| PEPFKLOM_17 | 1.0 | 0.0 | 1.0 |
| PEPFKLOM_18 | 1.0 | 0.0 | 1.0 |
| PEPFKLOM_19 | 0.0 | 1.0 | 0.0 |
| PEPFKLOM_20 | 1.0 | 0.0 | 1.0 |
| PEPFKLOM_21 | 0.0 | 1.0 | 0.0 |
| PEPFKLOM_22 | 0.0 | 1.0 | 0.0 |
| PEPFKLOM_23 | 1.0 | 0.0 | 1.0 |
| PEPFKLOM_24 | 0.0 | 1.0 | 0.0 |
| PEPFKLOM_25 | 0.0 | 1.0 | 0.0 |
| PEPFKLOM_26 | 1.0 | 0.0 | 1.0 |
| PEPFKLOM_28 | 1.0 | 0.0 | 1.0 |
| PEPFKLOM_29 | 0.0 | 1.0 | 0.0 |
| PEPFKLOM_30 | 0.0 | 1.0 | 0.0 |
| PEPFKLOM_31 | 1.0 | 0.0 | 1.0 |
| PEPFKLOM_32 | 0.0 | 1.0 | 0.0 |
| PEPFKLOM_33 | 0.0 | 1.0 | 0.0 |
| PEPFKLOM_34 | 1.0 | 0.0 | 1.0 |
| PEPFKLOM_35 | 1.0 | 0.0 | 1.0 |
| PEPFKLOM_36 | 0.0 | 1.0 | 0.0 |
| PEPFKLOM_37 | 0.0 | 1.0 | 0.0 |
| PEPFKLOM_38 | 1.0 | 0.0 | 1.0 |
| PEPFKLOM_39 | 1.0 | 0.0 | 1.0 |
| PEPFKLOM_40 | 1.0 | 0.0 | 1.0 |
| PEPFKLOM_41 | 1.0 | 0.0 | 1.0 |
| PEPFKLOM_42 | 1.0 | 0.0 | 1.0 |
| PEPFKLOM_43 | 1.0 | 0.0 | 1.0 |
| PEPFKLOM_44 | 1.0 | 0.0 | 1.0 |
| PEPFKLOM_45 | 1.0 | 0.0 | 1.0 |
| PEPFKLOM_46 | 0.0 | 1.0 | 0.0 |
| PEPFKLOM_47 | 0.0 | 1.0 | 0.0 |
| PEPFKLOM_48 | 0.0 | 1.0 | 0.0 |
| PEPFKLOM_49 | 1.0 | 0.0 | 1.0 |
| PEPFKLOM_50 | 0.0 | 1.0 | 0.0 |
| PEPFKLOM_51 | 1.0 | 0.0 | 1.0 |
| PEPFKLOM_52 | 0.0 | 1.0 | 0.0 |
| PEPFKLOM_53 | 1.0 | 0.0 | 1.0 |
| PEPFKLOM_54 | 0.0 | 1.0 | 0.0 |
| PEPFKLOM_55 | 1.0 | 0.0 | 1.0 |
| PEPFKLOM_56 | 1.0 | 0.0 | 1.0 |
| PEPFKLOM_57 | 0.0 | 1.0 | 0.0 |
| PEPFKLOM_58 | 0.0 | 1.0 | 0.0 |
| PEPFKLOM_59 | 1.0 | 0.0 | 1.0 |
| PEPFKLOM_61 | 1.0 | 0.0 | 1.0 |
| PEPFKLOM_62 | 1.0 | 0.0 | 1.0 |
| PEPFKLOM_63 | 0.0 | 1.0 | 0.0 |
| PEPFKLOM_64 | 1.0 | 0.0 | 1.0 |
| PEPFKLOM_66 | 1.0 | 0.0 | 1.0 |
| PEPFKLOM_67 | 0.0 | 1.0 | 0.0 |
| PEPFKLOM_68 | 1.0 | 0.0 | 1.0 |
| PEPFKLOM_69 | 0.0 | 1.0 | 0.0 |
| PEPFKLOM_71 | 1.0 | 0.0 | 1.0 |
| PEPFKLOM_72 | 1.0 | 0.0 | 1.0 |
| PEPFKLOM_73 | 1.0 | 0.0 | 1.0 |
| PEPFKLOM_74 | 0.0 | 1.0 | 0.0 |
| PEPFKLOM_75 | 1.0 | 0.0 | 1.0 |
| PEPFKLOM_80 | 0.0 | 1.0 | 0.0 |
| PEPFKLOM_89 | 1.0 | 0.0 | 1.0 |
| PEPFKLOM_91 | 0.0 | 1.0 | 0.0 |
| PEPFKLOM_102 | 0.0 | 1.0 | 0.0 |
| PEPFKLOM_113 | 0.0 | 1.0 | 0.0 |
| PEPFKLOM_114 | 0.0 | 1.0 | 0.0 |
| PEPFKLOM_125 | 0.0 | 1.0 | 0.0 |
| PEPFKLOM_136 | 0.0 | 1.0 | 0.0 |
| PEPFKLOM_147 | 0.0 | 1.0 | 0.0 |
| PEPFKLOM_150 | 0.0 | 1.0 | 0.0 |
| PEPFKLOM_151 | 0.0 | 1.0 | 0.0 |
| PEPFKLOM_152 | 0.0 | 1.0 | 0.0 |
| PEPFKLOM_153 | 0.0 | 1.0 | 0.0 |
| PEPFKLOM_154 | 0.0 | 1.0 | 0.0 |
| PEPFKLOM_155 | 0.0 | 1.0 | 0.0 |
| PEPFKLOM_156 | 0.0 | 1.0 | 0.0 |
| PEPFKLOM_157 | 0.0 | 1.0 | 0.0 |
| PEPFKLOM_158 | 0.0 | 1.0 | 0.0 |
| PEPFKLOM_159 | 0.0 | 1.0 | 0.0 |
| PEPFKLOM_160 | 0.0 | 1.0 | 0.0 |
| PEPFKLOM_161 | 0.0 | 1.0 | 0.0 |
| PEPFKLOM_162 | 0.0 | 1.0 | 0.0 |
| PEPFKLOM_163 | 0.0 | 1.0 | 0.0 |
| PEPFKLOM_164 | 1.0 | 0.0 | 1.0 |
| PEPFKLOM_165 | 0.0 | 1.0 | 0.0 |
| PEPFKLOM_166 | 0.0 | 1.0 | 0.0 |
| PEPFKLOM_167 | 0.0 | 1.0 | 0.0 |
| PEPFKLOM_168 | 0.0 | 1.0 | 0.0 |
| PEPFKLOM_169 | 0.0 | 1.0 | 0.0 |
| PEPFKLOM_170 | 0.0 | 1.0 | 0.0 |
| PEPFKLOM_171 | 0.0 | 1.0 | 0.0 |
| PEPFKLOM_172 | 0.0 | 1.0 | 0.0 |
| PEPFKLOM_173 | 0.0 | 1.0 | 0.0 |
| PEPFKLOM_174 | 0.0 | 1.0 | 0.0 |
| PEPFKLOM_175 | 0.0 | 1.0 | 0.0 |
| PEPFKLOM_176 | 0.0 | 1.0 | 0.0 |
| PEPFKLOM_177 | 0.0 | 1.0 | 0.0 |
| PEPFKLOM_178 | 0.0 | 1.0 | 0.0 |
| PEPFKLOM_179 | 1.0 | 0.0 | 1.0 |
| PEPFKLOM_180 | 0.0 | 1.0 | 0.0 |
| PEPFKLOM_181 | 0.0 | 1.0 | 0.0 |
| PEPFKLOM_182 | 1.0 | 0.0 | 1.0 |
| PEPFKLOM_183 | 0.0 | 1.0 | 0.0 |
| PEPFKLOM_184 | 0.0 | 1.0 | 0.0 |
| PEPFKLOM_185 | 0.0 | 1.0 | 0.0 |
| PEPFKLOM_186 | 0.0 | 1.0 | 0.0 |
| PEPFKLOM_187 | 0.0 | 1.0 | 0.0 |
| PEPFKLOM_188 | 0.0 | 1.0 | 0.0 |
| PEPFKLOM_189 | 0.0 | 1.0 | 0.0 |
| PEPFKLOM_190 | 0.0 | 1.0 | 0.0 |
| PEPFKLOM_191 | 0.0 | 1.0 | 0.0 |
| PEPFKLOM_192 | 1.0 | 0.0 | 1.0 |
| PEPFKLOM_193 | 0.0 | 1.0 | 0.0 |
| PEPFKLOM_194 | 0.0 | 1.0 | 0.0 |
| PEPFKLOM_195 | 0.0 | 1.0 | 0.0 |
| PEPFKLOM_196 | 0.0 | 1.0 | 0.0 |
| PEPFKLOM_197 | 0.0 | 1.0 | 0.0 |
| PEPFKLOM_198 | 0.0 | 1.0 | 0.0 |
| PEPFKLOM_199 | 0.0 | 1.0 | 0.0 |
| PEPFKLOM_200 | 0.0 | 1.0 | 0.0 |
| PEPFKLOM_201 | 0.0 | 1.0 | 0.0 |
| PEPFKLOM_202 | 0.0 | 1.0 | 0.0 |
| PEPFKLOM_203 | 0.0 | 1.0 | 0.0 |
| PEPFKLOM_204 | 1.0 | 0.0 | 1.0 |
| PEPFKLOM_205 | 0.0 | 1.0 | 0.0 |
| PEPFKLOM_206 | 0.0 | 1.0 | 0.0 |
| PEPFKLOM_207 | 0.0 | 1.0 | 0.0 |
| PEPFKLOM_208 | 1.0 | 0.0 | 1.0 |
| PEPFKLOM_209 | 0.0 | 1.0 | 0.0 |
| PEPFKLOM_210 | 0.0 | 1.0 | 0.0 |
| PEPFKLOM_211 | 0.0 | 1.0 | 0.0 |
| PEPFKLOM_212 | 0.0 | 1.0 | 0.0 |
| PEPFKLOM_213 | 0.0 | 1.0 | 0.0 |
| PEPFKLOM_214 | 0.0 | 1.0 | 0.0 |
| PEPFKLOM_215 | 1.0 | 0.0 | 1.0 |
| PEPFKLOM_216 | 0.0 | 1.0 | 0.0 |
| PEPFKLOM_217 | 0.0 | 1.0 | 0.0 |
| PEPFKLOM_218 | 0.0 | 1.0 | 0.0 |
| PEPFKLOM_219 | 0.0 | 1.0 | 0.0 |
| PEPFKLOM_220 | 0.0 | 1.0 | 0.0 |
| PEPFKLOM_221 | 1.0 | 0.0 | 1.0 |
| PEPFKLOM_222 | 0.0 | 1.0 | 0.0 |
| PEPFKLOM_223 | 0.0 | 1.0 | 0.0 |
| PEPFKLOM_224 | 0.0 | 1.0 | 0.0 |
| PEPFKLOM_225 | 0.0 | 1.0 | 0.0 |
| PEPFKLOM_226 | 1.0 | 0.0 | 1.0 |
| PEPFKLOM_227 | 0.0 | 1.0 | 0.0 |
| PEPFKLOM_228 | 1.0 | 0.0 | 1.0 |
| PEPFKLOM_229 | 0.0 | 1.0 | 0.0 |
| PEPFKLOM_230 | 0.0 | 1.0 | 0.0 |
| PEPFKLOM_231 | 1.0 | 0.0 | 1.0 |
| PEPFKLOM_232 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| PEPFKLOM_147 | 24650 | 43579 | False | Siphoviridae | VOG5616, VOG0796, VOG10227, VOG0720, VOG4564, VOG3434, VOG1887, VOG4713, VOG0723, VOG9583, VOG0799, VOG0725, VOG1323, VOG4545, VOG3949, VOG0801 |
| PEPFKLOM_164 | 2041 | 27425 | False | Siphoviridae | VOG10957, VOG4599, VOG4605, VOG4545, VOG0660, VOG4586, VOG0207, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556, VOG0202, VOG1886, VOG4581, VOG4841, VOG0198 |
| PEPFKLOM_169 | 10476 | 19114 | False | Siphoviridae | VOG5852, VOG4586, VOG0704, VOG0539, VOG4589, VOG0562, VOG4553, VOG4573, VOG4556 |
| PEPFKLOM_176 | 1386 | 18508 | False | Siphoviridae | VOG9295, VOG0796, VOG4544, VOG10904, VOG10227, VOG0691, VOG0692, VOG10527, VOG4555, VOG4711, VOG0695, VOG0696, VOG0697, VOG0698, VOG9763, VOG0701 |
Phigaro v2.4.0 (Database: Jan. 2024 release)