Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| ABFFDFME_2 | 1345665 | 1346369 | WalR | 1.81e-113 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| ABFFDFME_1 | 1.0 | 0.0 | 1.0 |
| ABFFDFME_2 | 0.0 | 1.0 | 0.0 |
| ABFFDFME_3 | 1.0 | 0.0 | 1.0 |
| ABFFDFME_4 | 1.0 | 0.0 | 1.0 |
| ABFFDFME_5 | 0.0 | 1.0 | 0.0 |
| ABFFDFME_6 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| ABFFDFME_2 | 304839 | 316411 | False | Siphoviridae | VOG7515, VOG0198, VOG0204, VOG4553, VOG4556, VOG5051, VOG4544, VOG4581, VOG4841, VOG0205, VOG4609 |
| ABFFDFME_2 | 2285814 | 2306869 | False | Siphoviridae | VOG5616, VOG3699, VOG0691, VOG0692, VOG9317, VOG4711, VOG3772, VOG0695, VOG0696, VOG0697, VOG0698, VOG5165, VOG0701, VOG6163, VOG0801, VOG4619 |
| ABFFDFME_2 | 2563094 | 2600698 | False | Siphoviridae | VOG4602, VOG8520, VOG1563, VOG8222, VOG0181, VOG0321, VOG4548, VOG10904, VOG0322, VOG6545, VOG4632, VOG4609, VOG0327, VOG3643, VOG0052, VOG6972, VOG6154, VOG4844, VOG4556, VOG4573, VOG4553, VOG0562, VOG4589, VOG0539, VOG0704, VOG4586, VOG5088, VOG5852, VOG6163, VOG0801, VOG4619, VOG3498, VOG8917, VOG9888, VOG0602, VOG8294 |
| ABFFDFME_2 | 3235952 | 3268320 | False | Siphoviridae | VOG3711, VOG0650, VOG9234, VOG7859, VOG0535, VOG0322, VOG0514, VOG4566, VOG0189, VOG6005, VOG1298, VOG0044, VOG3643, VOG9671, VOG0198, VOG4841, VOG0468, VOG4581, VOG1886, VOG0202, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG0207, VOG4586, VOG0209, VOG0660, VOG6163, VOG4605, VOG4599, VOG10957 |
| ABFFDFME_5 | 5818 | 13247 | True | Siphoviridae | VOG4357, VOG1026, VOG0198, VOG0044, VOG6005, VOG0189, VOG4799 |
| ABFFDFME_5 | 28927 | 44176 | False | Siphoviridae | VOG8438, VOG4626, VOG3463, VOG4619, VOG0801, VOG4910, VOG0701, VOG9763, VOG0698, VOG0697, VOG0696, VOG0695 |
Phigaro v2.4.0 (Database: Jan. 2024 release)