Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| NDPEEAKH_2 | 1951114 | 1951818 | WalR | 1.79e-113 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| NDPEEAKH_6 | 856 | 1785 | rep28 | 930 / 930 | 97.42 | CP003162 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| NDPEEAKH_1 | 1.0 | 0.0 | 1.0 |
| NDPEEAKH_2 | 0.0 | 1.0 | 0.0 |
| NDPEEAKH_3 | 1.0 | 0.0 | 1.0 |
| NDPEEAKH_4 | 1.0 | 0.0 | 1.0 |
| NDPEEAKH_5 | 0.0 | 1.0 | 0.0 |
| NDPEEAKH_6 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| NDPEEAKH_2 | 544845 | 573357 | False | Siphoviridae | VOG3462, VOG0801, VOG6163, VOG0725, VOG0799, VOG0724, VOG9583, VOG4713, VOG1329, VOG10914, VOG4564, VOG0720, VOG10227, VOG0796, VOG0045, VOG1183, VOG5278, VOG1315, VOG0198, VOG1049, VOG3643, VOG8891, VOG4813, VOG0189, VOG4566, VOG0514, VOG0322, VOG0685, VOG0650, VOG4552, VOG2338 |
| NDPEEAKH_2 | 891221 | 912714 | False | Siphoviridae | VOG8438, VOG3463, VOG3462, VOG0801, VOG3949, VOG4545, VOG1323, VOG0725, VOG0799, VOG9583, VOG0723, VOG4713, VOG1887, VOG3434, VOG4564, VOG0720, VOG10227, VOG0796, VOG5616 |
| NDPEEAKH_2 | 3087287 | 3093337 | False | Siphoviridae | VOG7653, VOG0650, VOG0535, VOG0322, VOG0514, VOG7318, VOG8647 |
| NDPEEAKH_2 | 3096726 | 3135982 | False | Siphoviridae | VOG4841, VOG4581, VOG1886, VOG0202, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG0207, VOG4586, VOG0660, VOG4545, VOG4605, VOG4599, VOG10957, VOG9998, VOG0753, VOG0275, VOG4602, VOG8520, VOG1563, VOG8222, VOG0181, VOG8925, VOG3876, VOG0321, VOG4548, VOG9667, VOG0322, VOG6545, VOG4632, VOG4609, VOG6965 |
| NDPEEAKH_2 | 3140637 | 3163564 | False | Siphoviridae | VOG4844, VOG4556, VOG4573, VOG4553, VOG0562, VOG4589, VOG0539, VOG0704, VOG4586, VOG5852, VOG5068, VOG0801, VOG3462, VOG4856, VOG8917, VOG9741, VOG0602 |
| NDPEEAKH_5 | 5082 | 8947 | False | Unknown | VOG1183, VOG5278, VOG0198, VOG0044 |
| NDPEEAKH_5 | 22356 | 39810 | False | Siphoviridae | VOG0866, VOG8294, VOG0602, VOG7011, VOG8917, VOG8438, VOG4626, VOG4619, VOG0801, VOG0701, VOG9763, VOG0698, VOG0697, VOG0696, VOG0695, VOG4711 |
Phigaro v2.4.0 (Database: Jan. 2024 release)