Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 4 | 1 | 4 | 5.74 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| IMNAJMDP_2 | 263910 | 264755 | Erm(34) | ARO:3000600 | Erm(34) | 98.58 | 100.00 | AY234334.1 |
| IMNAJMDP_11 | 13434 | 14204 | ANT(4')-Ib | ARO:3003905 | ANT(4')-Ib | 93.36 | 100.00 | EF540343.1 |
| IMNAJMDP_22 | 8850 | 9902 | clbC | ARO:3002816 | clbC | 97.14 | 100.00 | AP006627.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| IMNAJMDP_2 | 263910 | 264755 | erm(34) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 97.99 | 100.00 | AY234334 |
| IMNAJMDP_11 | 13434 | 14204 | ant(4')-Ib | Amikacin, Tobramycin, Isepamicin, Dibekacin | 94.05 | 99.74 | AJ506108 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| IMNAJMDP_2 | 263910 | 264752 | erm(34) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(34) | BLASTX | 98.58 | 100.00 | WP_063844504.1 |
| IMNAJMDP_11 | 16618 | 17520 | blaBCL | BCL family class A beta-lactamase | BLASTX | 97.34 | 100.00 | WP_065825670.1 |
| IMNAJMDP_22 | 8850 | 9899 | clbB | 23S rRNA (adenine(2503)-C(8))-methyltransferase ClbB | BLASTX | 97.14 | 100.00 | WP_011245929.1 |
| IMNAJMDP_11 | 13434 | 14201 | aadD2 | aminoglycoside O-nucleotidyltransferase ANT(4')-Ib | BLASTX | 93.36 | 100.00 | WP_035202393.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| IMNAJMDP_1 | 617324 | 617974 | hlyIII | 0.0 | Hemolysin III | Exotoxin | 97.23 | 100.00 | WP_011247375 |
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| IMNAJMDP_19 | 32649 | 33785 | tufA | 0.0 | elongation factor Tu | 87.33 | 95.69 | AHM69299 |
| IMNAJMDP_17 | 36635 | 36877 | SpoVG | 2.57e-37 | RNA-binding protein | 81.48 | 79.41 | AAT02994 |
| IMNAJMDP_4 | 31520 | 31326 | CspA | 1.60e-29 | cold shock protein | 86.15 | 98.48 | CAA62903 |
| IMNAJMDP_26 | 25232 | 25420 | CspB | 4.46e-26 | cold shock protein | 82.54 | 95.45 | CAD00094 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| IMNAJMDP_1 | 0.0 | 1.0 | 0.0 |
| IMNAJMDP_2 | 0.0 | 1.0 | 0.0 |
| IMNAJMDP_3 | 0.0 | 1.0 | 0.0 |
| IMNAJMDP_4 | 0.0 | 1.0 | 0.0 |
| IMNAJMDP_5 | 0.0 | 1.0 | 0.0 |
| IMNAJMDP_6 | 0.0 | 1.0 | 0.0 |
| IMNAJMDP_7 | 0.0 | 1.0 | 0.0 |
| IMNAJMDP_8 | 0.0 | 1.0 | 0.0 |
| IMNAJMDP_9 | 0.0 | 1.0 | 0.0 |
| IMNAJMDP_10 | 0.0 | 1.0 | 0.0 |
| IMNAJMDP_11 | 0.0 | 1.0 | 0.0 |
| IMNAJMDP_12 | 0.0 | 1.0 | 0.0 |
| IMNAJMDP_13 | 0.0 | 1.0 | 0.0 |
| IMNAJMDP_14 | 0.0 | 1.0 | 0.0 |
| IMNAJMDP_15 | 0.0 | 1.0 | 0.0 |
| IMNAJMDP_16 | 0.0 | 1.0 | 0.0 |
| IMNAJMDP_17 | 0.0 | 1.0 | 0.0 |
| IMNAJMDP_18 | 0.0 | 1.0 | 0.0 |
| IMNAJMDP_19 | 0.0 | 1.0 | 0.0 |
| IMNAJMDP_20 | 0.0 | 1.0 | 0.0 |
| IMNAJMDP_21 | 0.0 | 1.0 | 0.0 |
| IMNAJMDP_22 | 0.0 | 1.0 | 0.0 |
| IMNAJMDP_23 | 0.0 | 1.0 | 0.0 |
| IMNAJMDP_24 | 0.0 | 1.0 | 0.0 |
| IMNAJMDP_25 | 0.0 | 1.0 | 0.0 |
| IMNAJMDP_26 | 0.0 | 1.0 | 0.0 |
| IMNAJMDP_27 | 0.0 | 1.0 | 0.0 |
| IMNAJMDP_28 | 0.0 | 1.0 | 0.0 |
| IMNAJMDP_29 | 0.0 | 1.0 | 0.0 |
| IMNAJMDP_30 | 0.0 | 1.0 | 0.0 |
| IMNAJMDP_31 | 0.0 | 1.0 | 0.0 |
| IMNAJMDP_32 | 1.0 | 0.0 | 1.0 |
| IMNAJMDP_33 | 0.0 | 1.0 | 0.0 |
| IMNAJMDP_34 | 1.0 | 0.0 | 1.0 |
| IMNAJMDP_35 | 0.0 | 1.0 | 0.0 |
| IMNAJMDP_36 | 1.0 | 0.0 | 1.0 |
| IMNAJMDP_37 | 0.0 | 1.0 | 0.0 |
| IMNAJMDP_38 | 1.0 | 0.0 | 1.0 |
| IMNAJMDP_39 | 1.0 | 0.0 | 1.0 |
| IMNAJMDP_41 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| IMNAJMDP_11 | 90956 | 117120 | False | Siphoviridae | VOG0866, VOG6116, VOG0018, VOG3477, VOG4555, VOG4724, VOG0641, VOG6004, VOG4599, VOG0727, VOG0800, VOG0725, VOG0880, VOG0799, VOG0724, VOG5660, VOG0723, VOG4713, VOG1887, VOG3434, VOG4555, VOG2522, VOG4564, VOG0720, VOG10227, VOG0796, VOG5616 |
| IMNAJMDP_11 | 122744 | 131400 | False | Siphoviridae | VOG0189, VOG4799, VOG10059, VOG2038, VOG4561, VOG9630, VOG2913, VOG0044, VOG10099, VOG8430, VOG9650, VOG6064, VOG9438, VOG6581 |
| IMNAJMDP_14 | 36352 | 47919 | False | Myoviridae | VOG4862, VOG4691, VOG4550, VOG3894, VOG4885, VOG4865, VOG0179, VOG3892, VOG3891, VOG3890 |
Phigaro v2.4.0 (Database: Jan. 2024 release)