Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 4 | 1 | 4 | 5.74 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| EKKICKHD_1 | 126629 | 127474 | Erm(34) | ARO:3000600 | Erm(34) | 98.22 | 100.00 | AY234334.1 |
| EKKICKHD_13 | 68118 | 68888 | ANT(4')-Ib | ARO:3003905 | ANT(4')-Ib | 93.75 | 100.00 | EF540343.1 |
| EKKICKHD_9 | 66363 | 67415 | clbC | ARO:3002816 | clbC | 97.14 | 100.00 | AP006627.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| EKKICKHD_1 | 126629 | 127474 | erm(34) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 97.99 | 100.00 | AY234334 |
| EKKICKHD_13 | 68118 | 68888 | ant(4')-Ib | Amikacin, Tobramycin, Isepamicin, Dibekacin | 94.29 | 100.00 | AJ506108 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| EKKICKHD_1 | 126629 | 127471 | erm(34) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(34) | BLASTX | 98.22 | 100.00 | WP_063844504.1 |
| EKKICKHD_9 | 66366 | 67415 | clbB | 23S rRNA (adenine(2503)-C(8))-methyltransferase ClbB | BLASTX | 97.14 | 100.00 | WP_011245929.1 |
| EKKICKHD_13 | 64802 | 65704 | blaBCL | BCL family class A beta-lactamase | BLASTX | 97.01 | 100.00 | WP_065825670.1 |
| EKKICKHD_13 | 68121 | 68888 | aadD2 | aminoglycoside O-nucleotidyltransferase ANT(4')-Ib | BLASTX | 93.75 | 100.00 | WP_035202393.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| EKKICKHD_30 | 8461 | 9111 | hlyIII | 0.0 | Hemolysin III | Exotoxin | 97.39 | 100.00 | WP_011247375 |
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| EKKICKHD_18 | 38247 | 37111 | tufA | 0.0 | elongation factor Tu | 87.33 | 95.69 | AHM69299 |
| EKKICKHD_23 | 100 | 342 | SpoVG | 1.38e-37 | RNA-binding protein | 81.48 | 79.41 | AAT02994 |
| EKKICKHD_21 | 33900 | 33703 | CspA | 1.18e-30 | cold shock protein | 86.36 | 100.00 | CAA62903 |
| EKKICKHD_10 | 172375 | 172187 | CspB | 2.38e-25 | cold shock protein | 82.54 | 95.45 | CAD00094 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| EKKICKHD_1 | 0.0 | 1.0 | 0.0 |
| EKKICKHD_2 | 0.0 | 1.0 | 0.0 |
| EKKICKHD_3 | 0.0 | 1.0 | 0.0 |
| EKKICKHD_4 | 0.0 | 1.0 | 0.0 |
| EKKICKHD_5 | 0.0 | 1.0 | 0.0 |
| EKKICKHD_6 | 0.0 | 1.0 | 0.0 |
| EKKICKHD_7 | 0.0 | 1.0 | 0.0 |
| EKKICKHD_8 | 0.0 | 1.0 | 0.0 |
| EKKICKHD_9 | 0.0 | 1.0 | 0.0 |
| EKKICKHD_10 | 0.0 | 1.0 | 0.0 |
| EKKICKHD_11 | 0.0 | 1.0 | 0.0 |
| EKKICKHD_12 | 0.0 | 1.0 | 0.0 |
| EKKICKHD_13 | 0.0 | 1.0 | 0.0 |
| EKKICKHD_14 | 0.0 | 1.0 | 0.0 |
| EKKICKHD_15 | 0.0 | 1.0 | 0.0 |
| EKKICKHD_16 | 0.0 | 1.0 | 0.0 |
| EKKICKHD_17 | 0.0 | 1.0 | 0.0 |
| EKKICKHD_18 | 0.0 | 1.0 | 0.0 |
| EKKICKHD_19 | 0.0 | 1.0 | 0.0 |
| EKKICKHD_20 | 0.0 | 1.0 | 0.0 |
| EKKICKHD_21 | 0.0 | 1.0 | 0.0 |
| EKKICKHD_22 | 0.0 | 1.0 | 0.0 |
| EKKICKHD_23 | 0.0 | 1.0 | 0.0 |
| EKKICKHD_24 | 0.0 | 1.0 | 0.0 |
| EKKICKHD_25 | 0.0 | 1.0 | 0.0 |
| EKKICKHD_26 | 0.0 | 1.0 | 0.0 |
| EKKICKHD_27 | 0.0 | 1.0 | 0.0 |
| EKKICKHD_28 | 0.0 | 1.0 | 0.0 |
| EKKICKHD_29 | 0.0 | 1.0 | 0.0 |
| EKKICKHD_30 | 0.0 | 1.0 | 0.0 |
| EKKICKHD_31 | 0.0 | 1.0 | 0.0 |
| EKKICKHD_32 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| No hit found | |||||
Phigaro v2.4.0 (Database: Jan. 2024 release)