Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| PKPILHAG_3 | 259496 | 258792 | WalR | 1.81e-114 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| PKPILHAG_7 | 91464 | 91270 | CspR | 7.63e-30 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| PKPILHAG_7 | 91464 | 91267 | CspA | 1.17e-29 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| PKPILHAG_1 | 0.0 | 1.0 | 0.0 |
| PKPILHAG_2 | 0.0 | 1.0 | 0.0 |
| PKPILHAG_3 | 0.0 | 1.0 | 0.0 |
| PKPILHAG_4 | 0.0 | 1.0 | 0.0 |
| PKPILHAG_5 | 0.0 | 1.0 | 0.0 |
| PKPILHAG_6 | 0.0 | 1.0 | 0.0 |
| PKPILHAG_7 | 0.0 | 1.0 | 0.0 |
| PKPILHAG_8 | 0.0 | 1.0 | 0.0 |
| PKPILHAG_9 | 0.0 | 1.0 | 0.0 |
| PKPILHAG_10 | 0.0 | 1.0 | 0.0 |
| PKPILHAG_11 | 0.0 | 1.0 | 0.0 |
| PKPILHAG_12 | 0.0 | 1.0 | 0.0 |
| PKPILHAG_13 | 0.0 | 1.0 | 0.0 |
| PKPILHAG_14 | 0.0 | 1.0 | 0.0 |
| PKPILHAG_15 | 0.0 | 1.0 | 0.0 |
| PKPILHAG_16 | 0.0 | 1.0 | 0.0 |
| PKPILHAG_17 | 0.0 | 1.0 | 0.0 |
| PKPILHAG_18 | 1.0 | 0.0 | 1.0 |
| PKPILHAG_19 | 0.0 | 1.0 | 0.0 |
| PKPILHAG_20 | 0.0 | 1.0 | 0.0 |
| PKPILHAG_21 | 0.0 | 1.0 | 0.0 |
| PKPILHAG_22 | 1.0 | 0.0 | 1.0 |
| PKPILHAG_23 | 0.0 | 1.0 | 0.0 |
| PKPILHAG_24 | 0.0 | 1.0 | 0.0 |
| PKPILHAG_25 | 1.0 | 0.0 | 1.0 |
| PKPILHAG_26 | 0.0 | 1.0 | 0.0 |
| PKPILHAG_27 | 1.0 | 0.0 | 1.0 |
| PKPILHAG_28 | 1.0 | 0.0 | 1.0 |
| PKPILHAG_29 | 1.0 | 0.0 | 1.0 |
| PKPILHAG_30 | 1.0 | 0.0 | 1.0 |
| PKPILHAG_31 | 1.0 | 0.0 | 1.0 |
| PKPILHAG_32 | 1.0 | 0.0 | 1.0 |
| PKPILHAG_33 | 1.0 | 0.0 | 1.0 |
| PKPILHAG_34 | 0.0 | 1.0 | 0.0 |
| PKPILHAG_35 | 0.0 | 1.0 | 0.0 |
| PKPILHAG_36 | 0.0 | 1.0 | 0.0 |
| PKPILHAG_37 | 1.0 | 0.0 | 1.0 |
| PKPILHAG_39 | 1.0 | 0.0 | 1.0 |
| PKPILHAG_40 | 1.0 | 0.0 | 1.0 |
| PKPILHAG_41 | 0.0 | 1.0 | 0.0 |
| PKPILHAG_42 | 1.0 | 0.0 | 1.0 |
| PKPILHAG_45 | 1.0 | 0.0 | 1.0 |
| PKPILHAG_46 | 0.0 | 1.0 | 0.0 |
| PKPILHAG_47 | 1.0 | 0.0 | 1.0 |
| PKPILHAG_48 | 0.0 | 1.0 | 0.0 |
| PKPILHAG_49 | 1.0 | 0.0 | 1.0 |
| PKPILHAG_50 | 1.0 | 0.0 | 1.0 |
| PKPILHAG_51 | 1.0 | 0.0 | 1.0 |
| PKPILHAG_52 | 1.0 | 0.0 | 1.0 |
| PKPILHAG_53 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| PKPILHAG_1 | 363824 | 392866 | False | Siphoviridae | VOG0054, VOG0753, VOG4615, VOG9998, VOG8870, VOG10957, VOG4599, VOG4605, VOG4545, VOG0660, VOG4586, VOG0207, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556, VOG0202, VOG1886, VOG4581, VOG4841, VOG0198, VOG3643, VOG0044 |
| PKPILHAG_4 | 28512 | 38935 | False | Siphoviridae | VOG8520, VOG1563, VOG8222, VOG8925, VOG6495, VOG0321, VOG4548, VOG6394, VOG0322, VOG6545, VOG4632, VOG4609, VOG0327, VOG0586 |
| PKPILHAG_4 | 44088 | 64925 | False | Siphoviridae | VOG4844, VOG4556, VOG4573, VOG4553, VOG0562, VOG4589, VOG0539, VOG0704, VOG4586, VOG0541, VOG6163, VOG5068, VOG0801, VOG4619, VOG3498, VOG9997 |
| PKPILHAG_11 | 2474 | 29053 | False | Siphoviridae | VOG8294, VOG0765, VOG0602, VOG1637, VOG7896, VOG4334, VOG4626, VOG3463, VOG3462, VOG0801, VOG4545, VOG1323, VOG0725, VOG0799, VOG5660, VOG0723, VOG4713, VOG1887, VOG3434, VOG4555, VOG4564, VOG0720, VOG10227, VOG0796, VOG0638, VOG9846, VOG1183, VOG0198, VOG1049, VOG2602, VOG3643, VOG0044 |
| PKPILHAG_11 | 31215 | 36853 | False | Siphoviridae | VOG4566, VOG0186, VOG1309, VOG2703, VOG7298, VOG0181, VOG9655, VOG6495 |
| PKPILHAG_11 | 46394 | 54180 | False | Siphoviridae | VOG0198, VOG0204, VOG4568, VOG4556, VOG2935, VOG4544, VOG4581, VOG4841, VOG0205 |
Phigaro v2.4.0 (Database: Jan. 2024 release)