Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 0 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| ADDNFPPC_23 | 26411 | 29737 | Bifidobacterium bifidum ileS conferring resistance to mupirocin | ARO:3003730 | Bbif_ileS_MUP | 99.46 | 100.09 | CP001840.1 |
| ADDNFPPC_29 | 82 | 3765 | Bifidobacterium adolescentis rpoB mutants conferring resistance to rifampicin | ARO:3004480 | Bado_rpoB_RIF | 91.30 | 103.46 | NC_008618.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| ADDNFPPC_1 | 0.0 | 1.0 | 0.0 |
| ADDNFPPC_2 | 0.0 | 1.0 | 0.0 |
| ADDNFPPC_3 | 0.0 | 1.0 | 0.0 |
| ADDNFPPC_4 | 0.0 | 1.0 | 0.0 |
| ADDNFPPC_5 | 0.0 | 1.0 | 0.0 |
| ADDNFPPC_6 | 0.0 | 1.0 | 0.0 |
| ADDNFPPC_7 | 0.0 | 1.0 | 0.0 |
| ADDNFPPC_8 | 0.0 | 1.0 | 0.0 |
| ADDNFPPC_9 | 0.0 | 1.0 | 0.0 |
| ADDNFPPC_10 | 0.0 | 1.0 | 0.0 |
| ADDNFPPC_11 | 0.0 | 1.0 | 0.0 |
| ADDNFPPC_12 | 0.0 | 1.0 | 0.0 |
| ADDNFPPC_13 | 0.0 | 1.0 | 0.0 |
| ADDNFPPC_14 | 0.0 | 1.0 | 0.0 |
| ADDNFPPC_15 | 0.0 | 1.0 | 0.0 |
| ADDNFPPC_16 | 0.0 | 1.0 | 0.0 |
| ADDNFPPC_17 | 0.0 | 1.0 | 0.0 |
| ADDNFPPC_18 | 0.0 | 1.0 | 0.0 |
| ADDNFPPC_19 | 0.0 | 1.0 | 0.0 |
| ADDNFPPC_20 | 0.0 | 1.0 | 0.0 |
| ADDNFPPC_21 | 0.0 | 1.0 | 0.0 |
| ADDNFPPC_22 | 0.0 | 1.0 | 0.0 |
| ADDNFPPC_23 | 0.0 | 1.0 | 0.0 |
| ADDNFPPC_24 | 0.0 | 1.0 | 0.0 |
| ADDNFPPC_25 | 0.0 | 1.0 | 0.0 |
| ADDNFPPC_26 | 0.0 | 1.0 | 0.0 |
| ADDNFPPC_27 | 0.0 | 1.0 | 0.0 |
| ADDNFPPC_28 | 0.0 | 1.0 | 0.0 |
| ADDNFPPC_29 | 0.0 | 1.0 | 0.0 |
| ADDNFPPC_30 | 0.0 | 1.0 | 0.0 |
| ADDNFPPC_31 | 0.0 | 1.0 | 0.0 |
| ADDNFPPC_32 | 0.0 | 1.0 | 0.0 |
| ADDNFPPC_33 | 0.0 | 1.0 | 0.0 |
| ADDNFPPC_34 | 0.0 | 1.0 | 0.0 |
| ADDNFPPC_35 | 0.0 | 1.0 | 0.0 |
| ADDNFPPC_36 | 0.0 | 1.0 | 0.0 |
| ADDNFPPC_37 | 0.0 | 1.0 | 0.0 |
| ADDNFPPC_38 | 0.0 | 1.0 | 0.0 |
| ADDNFPPC_39 | 0.0 | 1.0 | 0.0 |
| ADDNFPPC_40 | 0.0 | 1.0 | 0.0 |
| ADDNFPPC_41 | 0.0 | 1.0 | 0.0 |
| ADDNFPPC_42 | 0.0 | 1.0 | 0.0 |
| ADDNFPPC_43 | 0.0 | 1.0 | 0.0 |
| ADDNFPPC_44 | 0.0 | 1.0 | 0.0 |
| ADDNFPPC_45 | 0.0 | 1.0 | 0.0 |
| ADDNFPPC_46 | 0.0 | 1.0 | 0.0 |
| ADDNFPPC_47 | 0.0 | 1.0 | 0.0 |
| ADDNFPPC_48 | 0.0 | 1.0 | 0.0 |
| ADDNFPPC_49 | 1.0 | 0.0 | 1.0 |
| ADDNFPPC_51 | 0.0 | 1.0 | 0.0 |
| ADDNFPPC_52 | 0.0 | 1.0 | 0.0 |
| ADDNFPPC_53 | 0.0 | 1.0 | 0.0 |
| ADDNFPPC_54 | 1.0 | 0.0 | 1.0 |
| ADDNFPPC_55 | 1.0 | 0.0 | 1.0 |
| ADDNFPPC_56 | 1.0 | 0.0 | 1.0 |
| ADDNFPPC_57 | 1.0 | 0.0 | 1.0 |
| ADDNFPPC_58 | 0.0 | 1.0 | 0.0 |
| ADDNFPPC_59 | 1.0 | 0.0 | 1.0 |
| ADDNFPPC_60 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| ADDNFPPC_1 | 1548 | 15275 | False | Siphoviridae | VOG4334, VOG9815, VOG4557, VOG4621, VOG1159, VOG3409, VOG1581, VOG5504, VOG4553, VOG4555, VOG4576, VOG0720, VOG4544, VOG1154, VOG2038, VOG8506 |
| ADDNFPPC_1 | 17146 | 25430 | False | Siphoviridae | VOG6089, VOG4559, VOG5782, VOG4571, VOG4548, VOG8909, VOG2902, VOG0226, VOG9430 |
| ADDNFPPC_5 | 58347 | 80133 | False | Myoviridae | VOG5012, VOG2090, VOG8190, VOG0052, VOG0382, VOG5689, VOG11016, VOG4548, VOG0384 |
| ADDNFPPC_11 | 44676 | 52355 | False | Siphoviridae | VOG2090, VOG11075, VOG0585, VOG3304, VOG0010, VOG4602 |
| ADDNFPPC_15 | 442 | 20181 | False | Siphoviridae | VOG3654, VOG2624, VOG4545, VOG4582, VOG3651, VOG4557, VOG4621, VOG1159, VOG3409, VOG1581, VOG4553, VOG4555, VOG4576, VOG0720, VOG4544, VOG1574, VOG0183, VOG1422, VOG9852, VOG2038 |
Phigaro v2.4.0 (Database: Jan. 2024 release)