Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 0 | 0 | 3.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| NIPEDNLJ_1 | 45901 | 47826 | tet(W) | ARO:3000194 | tet(W) | 97.02 | 100.31 | AJ222769.3 |
| NIPEDNLJ_4 | 6088 | 6840 | ErmB | ARO:3000375 | ErmB | 99.18 | 100.81 | AF242872.1 |
| NIPEDNLJ_2 | 5977 | 6729 | ErmB | ARO:3000375 | ErmB | 99.18 | 100.81 | AF242872.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| NIPEDNLJ_2 | 5977 | 6729 | erm(B) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.87 | 100.00 | U48430 |
| NIPEDNLJ_1 | 45901 | 47813 | tet(W) | Doxycycline, Tetracycline, Minocycline | 99.06 | 99.64 | FN396364 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| NIPEDNLJ_1 | 45901 | 47814 | tet(W) | tetracycline resistance ribosomal protection protein Tet(W) | BLASTX | 99.84 | 99.84 | WP_000691721.1 |
| NIPEDNLJ_2 | 5977 | 6726 | erm(B) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B) | BLASTX | 99.60 | 100.00 | WP_011018369.1 |
| NIPEDNLJ_4 | 6088 | 6837 | erm(B) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B) | BLASTX | 99.60 | 100.00 | WP_011018369.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| NIPEDNLJ_1 | 0.0 | 1.0 | 0.0 |
| NIPEDNLJ_2 | 1.0 | 0.0 | 1.0 |
| NIPEDNLJ_3 | 1.0 | 0.0 | 1.0 |
| NIPEDNLJ_4 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| NIPEDNLJ_1 | 285370 | 311488 | True | Siphoviridae | VOG1784, VOG7515, VOG0221, VOG0221, VOG0641, VOG4589, VOG0204, VOG4553, VOG4573, VOG4556, VOG4544, VOG4571, VOG4581, VOG8909, VOG0198, VOG4548, VOG4548, VOG0327, VOG4606, VOG0026, VOG0021, VOG1047, VOG7438, VOG0052 |
| NIPEDNLJ_1 | 456743 | 498066 | False | Siphoviridae | VOG5353, VOG4156, VOG0371, VOG5378, VOG0275, VOG0792, VOG4821, VOG4821, VOG0982, VOG6495, VOG4603, VOG4552, VOG2228, VOG7341, VOG1309, VOG0186, VOG4799, VOG0536, VOG3307, VOG0650, VOG0198, VOG4841, VOG4581, VOG1886, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG0207, VOG4586, VOG0209, VOG0801, VOG3462, VOG10972, VOG0565, VOG9997, VOG4626 |
Phigaro v2.4.0 (Database: Jan. 2024 release)