Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 1 | 2.24 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| COCFCCGP_62 | 6940 | 8877 | tet(W) | ARO:3000194 | tet(W) | 96.55 | 100.94 | AJ222769.3 |
| COCFCCGP_63 | 3 | 731 | ErmB | ARO:3000375 | ErmB | 97.53 | 97.98 | AF242872.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| COCFCCGP_63 | 1 | 731 | erm(B) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.18 | 97.08 | AF080450 |
| COCFCCGP_62 | 6940 | 8852 | tet(W) | Doxycycline, Tetracycline, Minocycline | 98.85 | 99.64 | FN396364 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| COCFCCGP_62 | 6940 | 8853 | tet(W) | tetracycline resistance ribosomal protection protein Tet(W) | BLASTX | 99.69 | 99.84 | WP_003672618.1 |
| COCFCCGP_63 | 3 | 731 | erm(B) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B) | BLASTX | 98.77 | 97.98 | WP_063844850.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| COCFCCGP_10 | 51116 | 51310 | CspA | 2.38e-29 | cold shock protein | 84.61 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| COCFCCGP_25 | 2448 | 3486 | repUS67 | 1039 / 1039 | 97.11 | CP006012 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| COCFCCGP_1 | 0.0 | 1.0 | 0.0 |
| COCFCCGP_2 | 0.0 | 1.0 | 0.0 |
| COCFCCGP_3 | 0.0 | 1.0 | 0.0 |
| COCFCCGP_4 | 0.0 | 1.0 | 0.0 |
| COCFCCGP_5 | 0.0 | 1.0 | 0.0 |
| COCFCCGP_6 | 0.0 | 1.0 | 0.0 |
| COCFCCGP_7 | 0.0 | 1.0 | 0.0 |
| COCFCCGP_8 | 0.0 | 1.0 | 0.0 |
| COCFCCGP_9 | 0.0 | 1.0 | 0.0 |
| COCFCCGP_10 | 0.0 | 1.0 | 0.0 |
| COCFCCGP_11 | 0.0 | 1.0 | 0.0 |
| COCFCCGP_12 | 0.0 | 1.0 | 0.0 |
| COCFCCGP_13 | 0.0 | 1.0 | 0.0 |
| COCFCCGP_14 | 0.0 | 1.0 | 0.0 |
| COCFCCGP_15 | 0.0 | 1.0 | 0.0 |
| COCFCCGP_16 | 0.0 | 1.0 | 0.0 |
| COCFCCGP_17 | 0.0 | 1.0 | 0.0 |
| COCFCCGP_18 | 0.0 | 1.0 | 0.0 |
| COCFCCGP_19 | 0.0 | 1.0 | 0.0 |
| COCFCCGP_20 | 0.0 | 1.0 | 0.0 |
| COCFCCGP_21 | 0.0 | 1.0 | 0.0 |
| COCFCCGP_22 | 0.0 | 1.0 | 0.0 |
| COCFCCGP_23 | 0.0 | 1.0 | 0.0 |
| COCFCCGP_24 | 0.0 | 1.0 | 0.0 |
| COCFCCGP_25 | 1.0 | 0.0 | 1.0 |
| COCFCCGP_26 | 0.0 | 1.0 | 0.0 |
| COCFCCGP_27 | 0.0 | 1.0 | 0.0 |
| COCFCCGP_28 | 0.0 | 1.0 | 0.0 |
| COCFCCGP_29 | 0.0 | 1.0 | 0.0 |
| COCFCCGP_30 | 0.0 | 1.0 | 0.0 |
| COCFCCGP_31 | 0.0 | 1.0 | 0.0 |
| COCFCCGP_32 | 0.0 | 1.0 | 0.0 |
| COCFCCGP_33 | 0.0 | 1.0 | 0.0 |
| COCFCCGP_34 | 0.0 | 1.0 | 0.0 |
| COCFCCGP_35 | 1.0 | 0.0 | 1.0 |
| COCFCCGP_36 | 0.0 | 1.0 | 0.0 |
| COCFCCGP_37 | 0.0 | 1.0 | 0.0 |
| COCFCCGP_38 | 1.0 | 0.0 | 1.0 |
| COCFCCGP_39 | 0.0 | 1.0 | 0.0 |
| COCFCCGP_40 | 0.0 | 1.0 | 0.0 |
| COCFCCGP_41 | 0.0 | 1.0 | 0.0 |
| COCFCCGP_42 | 0.0 | 1.0 | 0.0 |
| COCFCCGP_43 | 0.0 | 1.0 | 0.0 |
| COCFCCGP_44 | 0.0 | 1.0 | 0.0 |
| COCFCCGP_45 | 1.0 | 0.0 | 1.0 |
| COCFCCGP_46 | 0.0 | 1.0 | 0.0 |
| COCFCCGP_47 | 0.0 | 1.0 | 0.0 |
| COCFCCGP_48 | 1.0 | 0.0 | 1.0 |
| COCFCCGP_49 | 1.0 | 0.0 | 1.0 |
| COCFCCGP_50 | 0.0 | 1.0 | 0.0 |
| COCFCCGP_51 | 0.0 | 1.0 | 0.0 |
| COCFCCGP_52 | 0.0 | 1.0 | 0.0 |
| COCFCCGP_53 | 0.0 | 1.0 | 0.0 |
| COCFCCGP_54 | 0.0 | 1.0 | 0.0 |
| COCFCCGP_55 | 0.0 | 1.0 | 0.0 |
| COCFCCGP_56 | 0.0 | 1.0 | 0.0 |
| COCFCCGP_57 | 0.0 | 1.0 | 0.0 |
| COCFCCGP_58 | 0.0 | 1.0 | 0.0 |
| COCFCCGP_59 | 0.0 | 1.0 | 0.0 |
| COCFCCGP_60 | 0.0 | 1.0 | 0.0 |
| COCFCCGP_61 | 1.0 | 0.0 | 1.0 |
| COCFCCGP_62 | 1.0 | 0.0 | 1.0 |
| COCFCCGP_63 | 1.0 | 0.0 | 1.0 |
| COCFCCGP_64 | 0.0 | 1.0 | 0.0 |
| COCFCCGP_65 | 0.0 | 1.0 | 0.0 |
| COCFCCGP_66 | 0.0 | 1.0 | 0.0 |
| COCFCCGP_67 | 1.0 | 0.0 | 1.0 |
| COCFCCGP_68 | 0.0 | 1.0 | 0.0 |
| COCFCCGP_69 | 1.0 | 0.0 | 1.0 |
| COCFCCGP_70 | 0.0 | 1.0 | 0.0 |
| COCFCCGP_71 | 0.0 | 1.0 | 0.0 |
| COCFCCGP_72 | 0.0 | 1.0 | 0.0 |
| COCFCCGP_73 | 0.0 | 1.0 | 0.0 |
| COCFCCGP_74 | 0.0 | 1.0 | 0.0 |
| COCFCCGP_75 | 1.0 | 0.0 | 1.0 |
| COCFCCGP_76 | 1.0 | 0.0 | 1.0 |
| COCFCCGP_78 | 0.0 | 1.0 | 0.0 |
| COCFCCGP_79 | 1.0 | 0.0 | 1.0 |
| COCFCCGP_80 | 0.0 | 1.0 | 0.0 |
| COCFCCGP_81 | 0.0 | 1.0 | 0.0 |
| COCFCCGP_82 | 1.0 | 0.0 | 1.0 |
| COCFCCGP_83 | 0.0 | 1.0 | 0.0 |
| COCFCCGP_84 | 0.0 | 1.0 | 0.0 |
| COCFCCGP_85 | 1.0 | 0.0 | 1.0 |
| COCFCCGP_86 | 0.0 | 1.0 | 0.0 |
| COCFCCGP_87 | 1.0 | 0.0 | 1.0 |
| COCFCCGP_88 | 1.0 | 0.0 | 1.0 |
| COCFCCGP_89 | 0.0 | 1.0 | 0.0 |
| COCFCCGP_90 | 0.0 | 1.0 | 0.0 |
| COCFCCGP_91 | 0.0 | 1.0 | 0.0 |
| COCFCCGP_92 | 0.0 | 1.0 | 0.0 |
| COCFCCGP_94 | 1.0 | 0.0 | 1.0 |
| COCFCCGP_95 | 1.0 | 0.0 | 1.0 |
| COCFCCGP_96 | 0.0 | 1.0 | 0.0 |
| COCFCCGP_97 | 1.0 | 0.0 | 1.0 |
| COCFCCGP_98 | 0.0 | 1.0 | 0.0 |
| COCFCCGP_99 | 0.0 | 1.0 | 0.0 |
| COCFCCGP_100 | 0.0 | 1.0 | 0.0 |
| COCFCCGP_101 | 0.0 | 1.0 | 0.0 |
| COCFCCGP_102 | 1.0 | 0.0 | 1.0 |
| COCFCCGP_103 | 0.0 | 1.0 | 0.0 |
| COCFCCGP_104 | 0.0 | 1.0 | 0.0 |
| COCFCCGP_105 | 1.0 | 0.0 | 1.0 |
| COCFCCGP_107 | 0.0 | 1.0 | 0.0 |
| COCFCCGP_108 | 0.0 | 1.0 | 0.0 |
| COCFCCGP_109 | 1.0 | 0.0 | 1.0 |
| COCFCCGP_110 | 1.0 | 0.0 | 1.0 |
| COCFCCGP_111 | 0.0 | 1.0 | 0.0 |
| COCFCCGP_112 | 1.0 | 0.0 | 1.0 |
| COCFCCGP_113 | 0.0 | 1.0 | 0.0 |
| COCFCCGP_114 | 1.0 | 0.0 | 1.0 |
| COCFCCGP_115 | 1.0 | 0.0 | 1.0 |
| COCFCCGP_116 | 1.0 | 0.0 | 1.0 |
| COCFCCGP_117 | 0.0 | 1.0 | 0.0 |
| COCFCCGP_118 | 1.0 | 0.0 | 1.0 |
| COCFCCGP_119 | 1.0 | 0.0 | 1.0 |
| COCFCCGP_120 | 1.0 | 0.0 | 1.0 |
| COCFCCGP_121 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| COCFCCGP_1 | 43040 | 67076 | False | Siphoviridae | VOG4606, VOG0198, VOG4570, VOG1345, VOG8625, VOG4841, VOG4581, VOG1886, VOG4556, VOG4568, VOG0204, VOG0205, VOG0207, VOG3210, VOG0209, VOG0660, VOG4052, VOG0801, VOG10972, VOG4856, VOG1637 |
| COCFCCGP_3 | 16899 | 27129 | False | Siphoviridae | VOG4568, VOG4556, VOG4544, VOG4581, VOG4841, VOG0205, VOG4606, VOG4632 |
| COCFCCGP_11 | 26128 | 50372 | False | Siphoviridae | VOG8294, VOG0703, VOG0641, VOG10593, VOG6163, VOG4633, VOG4545, VOG0800, VOG0725, VOG0799, VOG0724, VOG5660, VOG0723, VOG4713, VOG1319, VOG4555, VOG7533, VOG4564, VOG0720, VOG10227, VOG0796, VOG0198 |
Phigaro v2.4.0 (Database: Jan. 2024 release)