Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 0 | 1 | 3.16 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PNGJJDAJ_48 | 6779 | 8698 | tet(W) | ARO:3000194 | tet(W) | 92.63 | 100.00 | AJ222769.3 |
| PNGJJDAJ_58 | 5070 | 5816 | ErmB | ARO:3000375 | ErmB | 97.57 | 100.00 | AF242872.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| PNGJJDAJ_48 | 8877 | 10253 | tet(L) | Doxycycline, Tetracycline, Minocycline, Tigecycline, Doxycycline, Tetracycline | 99.49 | 100.00 | AY081910 |
| PNGJJDAJ_58 | 5070 | 5804 | erm(B) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.32 | 97.61 | AF080450 |
| PNGJJDAJ_48 | 6779 | 8683 | tet(O/W/O)-2 | Doxycycline, Tetracycline, Minocycline | 89.26 | 99.01 | AY196920 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PNGJJDAJ_58 | 5070 | 5810 | erm(B) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B) | BLASTX | 98.79 | 99.60 | WP_063844850.1 |
| PNGJJDAJ_48 | 8877 | 10250 | tet(L) | tetracycline efflux MFS transporter Tet(L) | BLASTX | 98.69 | 100.00 | WP_002294500.1 |
| PNGJJDAJ_48 | 6779 | 8692 | tet(W) | tetracycline resistance ribosomal protection protein Tet(W) | BLASTX | 94.67 | 99.84 | WP_003672618.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| PNGJJDAJ_7 | 41767 | 41961 | CspA | 9.69e-29 | cold shock protein | 84.61 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| PNGJJDAJ_25 | 2484 | 3519 | repUS67 | 1043 / 1039 | 94.44 | CP006012 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| PNGJJDAJ_1 | 0.0 | 1.0 | 0.0 |
| PNGJJDAJ_2 | 0.0 | 1.0 | 0.0 |
| PNGJJDAJ_3 | 0.0 | 1.0 | 0.0 |
| PNGJJDAJ_4 | 0.0 | 1.0 | 0.0 |
| PNGJJDAJ_5 | 0.0 | 1.0 | 0.0 |
| PNGJJDAJ_6 | 0.0 | 1.0 | 0.0 |
| PNGJJDAJ_7 | 0.0 | 1.0 | 0.0 |
| PNGJJDAJ_8 | 0.0 | 1.0 | 0.0 |
| PNGJJDAJ_9 | 0.0 | 1.0 | 0.0 |
| PNGJJDAJ_10 | 0.0 | 1.0 | 0.0 |
| PNGJJDAJ_11 | 0.0 | 1.0 | 0.0 |
| PNGJJDAJ_12 | 0.0 | 1.0 | 0.0 |
| PNGJJDAJ_13 | 0.0 | 1.0 | 0.0 |
| PNGJJDAJ_14 | 0.0 | 1.0 | 0.0 |
| PNGJJDAJ_15 | 0.0 | 1.0 | 0.0 |
| PNGJJDAJ_16 | 0.0 | 1.0 | 0.0 |
| PNGJJDAJ_17 | 0.0 | 1.0 | 0.0 |
| PNGJJDAJ_18 | 0.0 | 1.0 | 0.0 |
| PNGJJDAJ_19 | 0.0 | 1.0 | 0.0 |
| PNGJJDAJ_20 | 0.0 | 1.0 | 0.0 |
| PNGJJDAJ_21 | 1.0 | 0.0 | 1.0 |
| PNGJJDAJ_22 | 0.0 | 1.0 | 0.0 |
| PNGJJDAJ_23 | 0.0 | 1.0 | 0.0 |
| PNGJJDAJ_24 | 0.0 | 1.0 | 0.0 |
| PNGJJDAJ_25 | 1.0 | 0.0 | 1.0 |
| PNGJJDAJ_26 | 0.0 | 1.0 | 0.0 |
| PNGJJDAJ_27 | 0.0 | 1.0 | 0.0 |
| PNGJJDAJ_28 | 0.0 | 1.0 | 0.0 |
| PNGJJDAJ_29 | 0.0 | 1.0 | 0.0 |
| PNGJJDAJ_30 | 0.0 | 1.0 | 0.0 |
| PNGJJDAJ_31 | 0.0 | 1.0 | 0.0 |
| PNGJJDAJ_32 | 0.0 | 1.0 | 0.0 |
| PNGJJDAJ_33 | 0.0 | 1.0 | 0.0 |
| PNGJJDAJ_34 | 0.0 | 1.0 | 0.0 |
| PNGJJDAJ_35 | 0.0 | 1.0 | 0.0 |
| PNGJJDAJ_36 | 0.0 | 1.0 | 0.0 |
| PNGJJDAJ_37 | 1.0 | 0.0 | 1.0 |
| PNGJJDAJ_38 | 0.0 | 1.0 | 0.0 |
| PNGJJDAJ_39 | 0.0 | 1.0 | 0.0 |
| PNGJJDAJ_40 | 0.0 | 1.0 | 0.0 |
| PNGJJDAJ_41 | 0.0 | 1.0 | 0.0 |
| PNGJJDAJ_42 | 0.0 | 1.0 | 0.0 |
| PNGJJDAJ_43 | 0.0 | 1.0 | 0.0 |
| PNGJJDAJ_44 | 0.0 | 1.0 | 0.0 |
| PNGJJDAJ_45 | 1.0 | 0.0 | 1.0 |
| PNGJJDAJ_46 | 0.0 | 1.0 | 0.0 |
| PNGJJDAJ_47 | 0.0 | 1.0 | 0.0 |
| PNGJJDAJ_48 | 1.0 | 0.0 | 1.0 |
| PNGJJDAJ_49 | 0.0 | 1.0 | 0.0 |
| PNGJJDAJ_50 | 0.0 | 1.0 | 0.0 |
| PNGJJDAJ_51 | 0.0 | 1.0 | 0.0 |
| PNGJJDAJ_52 | 0.0 | 1.0 | 0.0 |
| PNGJJDAJ_53 | 1.0 | 0.0 | 1.0 |
| PNGJJDAJ_54 | 0.0 | 1.0 | 0.0 |
| PNGJJDAJ_55 | 0.0 | 1.0 | 0.0 |
| PNGJJDAJ_56 | 0.0 | 1.0 | 0.0 |
| PNGJJDAJ_57 | 0.0 | 1.0 | 0.0 |
| PNGJJDAJ_58 | 1.0 | 0.0 | 1.0 |
| PNGJJDAJ_59 | 0.0 | 1.0 | 0.0 |
| PNGJJDAJ_60 | 0.0 | 1.0 | 0.0 |
| PNGJJDAJ_61 | 0.0 | 1.0 | 0.0 |
| PNGJJDAJ_62 | 0.0 | 1.0 | 0.0 |
| PNGJJDAJ_63 | 1.0 | 0.0 | 1.0 |
| PNGJJDAJ_64 | 0.0 | 1.0 | 0.0 |
| PNGJJDAJ_65 | 0.0 | 1.0 | 0.0 |
| PNGJJDAJ_66 | 0.0 | 1.0 | 0.0 |
| PNGJJDAJ_67 | 1.0 | 0.0 | 1.0 |
| PNGJJDAJ_68 | 1.0 | 0.0 | 1.0 |
| PNGJJDAJ_69 | 0.0 | 1.0 | 0.0 |
| PNGJJDAJ_70 | 0.0 | 1.0 | 0.0 |
| PNGJJDAJ_71 | 1.0 | 0.0 | 1.0 |
| PNGJJDAJ_72 | 1.0 | 0.0 | 1.0 |
| PNGJJDAJ_73 | 1.0 | 0.0 | 1.0 |
| PNGJJDAJ_74 | 0.0 | 1.0 | 0.0 |
| PNGJJDAJ_75 | 1.0 | 0.0 | 1.0 |
| PNGJJDAJ_77 | 1.0 | 0.0 | 1.0 |
| PNGJJDAJ_78 | 0.0 | 1.0 | 0.0 |
| PNGJJDAJ_79 | 1.0 | 0.0 | 1.0 |
| PNGJJDAJ_80 | 0.0 | 1.0 | 0.0 |
| PNGJJDAJ_81 | 0.0 | 1.0 | 0.0 |
| PNGJJDAJ_82 | 0.0 | 1.0 | 0.0 |
| PNGJJDAJ_83 | 1.0 | 0.0 | 1.0 |
| PNGJJDAJ_84 | 1.0 | 0.0 | 1.0 |
| PNGJJDAJ_85 | 0.0 | 1.0 | 0.0 |
| PNGJJDAJ_86 | 1.0 | 0.0 | 1.0 |
| PNGJJDAJ_88 | 0.0 | 1.0 | 0.0 |
| PNGJJDAJ_89 | 0.0 | 1.0 | 0.0 |
| PNGJJDAJ_90 | 1.0 | 0.0 | 1.0 |
| PNGJJDAJ_91 | 1.0 | 0.0 | 1.0 |
| PNGJJDAJ_92 | 1.0 | 0.0 | 1.0 |
| PNGJJDAJ_93 | 1.0 | 0.0 | 1.0 |
| PNGJJDAJ_94 | 0.0 | 1.0 | 0.0 |
| PNGJJDAJ_95 | 1.0 | 0.0 | 1.0 |
| PNGJJDAJ_96 | 1.0 | 0.0 | 1.0 |
| PNGJJDAJ_97 | 0.0 | 1.0 | 0.0 |
| PNGJJDAJ_99 | 1.0 | 0.0 | 1.0 |
| PNGJJDAJ_100 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| PNGJJDAJ_5 | 12584 | 44323 | False | Siphoviridae | VOG10223, VOG4824, VOG0136, VOG1637, VOG4856, VOG10972, VOG0801, VOG6163, VOG0660, VOG0209, VOG0207, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556, VOG1886, VOG4581, VOG4841, VOG1345, VOG3616, VOG4570, VOG0198, VOG4606 |
Phigaro v2.4.0 (Database: Jan. 2024 release)