Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 0 | 1 | 3.16 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| GDGLFJNP_59 | 5887 | 6633 | ErmB | ARO:3000375 | ErmB | 97.57 | 100.00 | AF242872.1 |
| GDGLFJNP_55 | 4249 | 6168 | tet(W) | ARO:3000194 | tet(W) | 92.48 | 100.00 | AJ222769.3 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| GDGLFJNP_55 | 2694 | 4070 | tet(L) | Doxycycline, Tetracycline, Minocycline, Tigecycline, Doxycycline, Tetracycline | 99.49 | 100.00 | AY081910 |
| GDGLFJNP_59 | 5899 | 6633 | erm(B) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.32 | 97.61 | AF080450 |
| GDGLFJNP_55 | 4264 | 6168 | tet(O/W/O)-2 | Doxycycline, Tetracycline, Minocycline | 89.21 | 99.01 | AY196920 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| GDGLFJNP_59 | 5893 | 6633 | erm(B) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B) | BLASTX | 98.79 | 99.60 | WP_063844850.1 |
| GDGLFJNP_55 | 2697 | 4070 | tet(L) | tetracycline efflux MFS transporter Tet(L) | BLASTX | 98.69 | 100.00 | WP_002294500.1 |
| GDGLFJNP_55 | 4255 | 6168 | tet(W) | tetracycline resistance ribosomal protection protein Tet(W) | BLASTX | 94.51 | 99.84 | WP_003672618.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| GDGLFJNP_7 | 25395 | 25201 | CspA | 9.72e-29 | cold shock protein | 84.61 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| GDGLFJNP_1 | 0.0 | 1.0 | 0.0 |
| GDGLFJNP_2 | 1.0 | 0.0 | 1.0 |
| GDGLFJNP_3 | 0.0 | 1.0 | 0.0 |
| GDGLFJNP_4 | 0.0 | 1.0 | 0.0 |
| GDGLFJNP_5 | 0.0 | 1.0 | 0.0 |
| GDGLFJNP_6 | 0.0 | 1.0 | 0.0 |
| GDGLFJNP_7 | 0.0 | 1.0 | 0.0 |
| GDGLFJNP_8 | 0.0 | 1.0 | 0.0 |
| GDGLFJNP_9 | 0.0 | 1.0 | 0.0 |
| GDGLFJNP_10 | 0.0 | 1.0 | 0.0 |
| GDGLFJNP_11 | 0.0 | 1.0 | 0.0 |
| GDGLFJNP_12 | 0.0 | 1.0 | 0.0 |
| GDGLFJNP_13 | 0.0 | 1.0 | 0.0 |
| GDGLFJNP_14 | 0.0 | 1.0 | 0.0 |
| GDGLFJNP_15 | 0.0 | 1.0 | 0.0 |
| GDGLFJNP_16 | 0.0 | 1.0 | 0.0 |
| GDGLFJNP_17 | 0.0 | 1.0 | 0.0 |
| GDGLFJNP_18 | 0.0 | 1.0 | 0.0 |
| GDGLFJNP_19 | 0.0 | 1.0 | 0.0 |
| GDGLFJNP_20 | 0.0 | 1.0 | 0.0 |
| GDGLFJNP_21 | 0.0 | 1.0 | 0.0 |
| GDGLFJNP_22 | 0.0 | 1.0 | 0.0 |
| GDGLFJNP_23 | 0.0 | 1.0 | 0.0 |
| GDGLFJNP_24 | 0.0 | 1.0 | 0.0 |
| GDGLFJNP_25 | 0.0 | 1.0 | 0.0 |
| GDGLFJNP_26 | 0.0 | 1.0 | 0.0 |
| GDGLFJNP_27 | 0.0 | 1.0 | 0.0 |
| GDGLFJNP_28 | 0.0 | 1.0 | 0.0 |
| GDGLFJNP_29 | 0.0 | 1.0 | 0.0 |
| GDGLFJNP_30 | 1.0 | 0.0 | 1.0 |
| GDGLFJNP_31 | 0.0 | 1.0 | 0.0 |
| GDGLFJNP_32 | 0.0 | 1.0 | 0.0 |
| GDGLFJNP_33 | 0.0 | 1.0 | 0.0 |
| GDGLFJNP_34 | 0.0 | 1.0 | 0.0 |
| GDGLFJNP_35 | 0.0 | 1.0 | 0.0 |
| GDGLFJNP_36 | 1.0 | 0.0 | 1.0 |
| GDGLFJNP_37 | 0.0 | 1.0 | 0.0 |
| GDGLFJNP_38 | 0.0 | 1.0 | 0.0 |
| GDGLFJNP_39 | 0.0 | 1.0 | 0.0 |
| GDGLFJNP_40 | 0.0 | 1.0 | 0.0 |
| GDGLFJNP_41 | 0.0 | 1.0 | 0.0 |
| GDGLFJNP_42 | 0.0 | 1.0 | 0.0 |
| GDGLFJNP_43 | 0.0 | 1.0 | 0.0 |
| GDGLFJNP_44 | 0.0 | 1.0 | 0.0 |
| GDGLFJNP_45 | 0.0 | 1.0 | 0.0 |
| GDGLFJNP_46 | 1.0 | 0.0 | 1.0 |
| GDGLFJNP_47 | 0.0 | 1.0 | 0.0 |
| GDGLFJNP_48 | 0.0 | 1.0 | 0.0 |
| GDGLFJNP_49 | 1.0 | 0.0 | 1.0 |
| GDGLFJNP_50 | 0.0 | 1.0 | 0.0 |
| GDGLFJNP_51 | 0.0 | 1.0 | 0.0 |
| GDGLFJNP_52 | 0.0 | 1.0 | 0.0 |
| GDGLFJNP_53 | 0.0 | 1.0 | 0.0 |
| GDGLFJNP_54 | 0.0 | 1.0 | 0.0 |
| GDGLFJNP_55 | 1.0 | 0.0 | 1.0 |
| GDGLFJNP_56 | 0.0 | 1.0 | 0.0 |
| GDGLFJNP_57 | 0.0 | 1.0 | 0.0 |
| GDGLFJNP_58 | 0.0 | 1.0 | 0.0 |
| GDGLFJNP_59 | 1.0 | 0.0 | 1.0 |
| GDGLFJNP_60 | 0.0 | 1.0 | 0.0 |
| GDGLFJNP_61 | 0.0 | 1.0 | 0.0 |
| GDGLFJNP_62 | 0.0 | 1.0 | 0.0 |
| GDGLFJNP_63 | 0.0 | 1.0 | 0.0 |
| GDGLFJNP_64 | 0.0 | 1.0 | 0.0 |
| GDGLFJNP_65 | 1.0 | 0.0 | 1.0 |
| GDGLFJNP_66 | 0.0 | 1.0 | 0.0 |
| GDGLFJNP_67 | 1.0 | 0.0 | 1.0 |
| GDGLFJNP_68 | 1.0 | 0.0 | 1.0 |
| GDGLFJNP_69 | 0.0 | 1.0 | 0.0 |
| GDGLFJNP_70 | 1.0 | 0.0 | 1.0 |
| GDGLFJNP_71 | 0.0 | 1.0 | 0.0 |
| GDGLFJNP_72 | 1.0 | 0.0 | 1.0 |
| GDGLFJNP_73 | 1.0 | 0.0 | 1.0 |
| GDGLFJNP_74 | 0.0 | 1.0 | 0.0 |
| GDGLFJNP_75 | 1.0 | 0.0 | 1.0 |
| GDGLFJNP_76 | 0.0 | 1.0 | 0.0 |
| GDGLFJNP_77 | 0.0 | 1.0 | 0.0 |
| GDGLFJNP_78 | 0.0 | 1.0 | 0.0 |
| GDGLFJNP_79 | 0.0 | 1.0 | 0.0 |
| GDGLFJNP_80 | 0.0 | 1.0 | 0.0 |
| GDGLFJNP_81 | 0.0 | 1.0 | 0.0 |
| GDGLFJNP_83 | 0.0 | 1.0 | 0.0 |
| GDGLFJNP_84 | 1.0 | 0.0 | 1.0 |
| GDGLFJNP_85 | 0.0 | 1.0 | 0.0 |
| GDGLFJNP_86 | 0.0 | 1.0 | 0.0 |
| GDGLFJNP_87 | 1.0 | 0.0 | 1.0 |
| GDGLFJNP_88 | 0.0 | 1.0 | 0.0 |
| GDGLFJNP_89 | 0.0 | 1.0 | 0.0 |
| GDGLFJNP_90 | 1.0 | 0.0 | 1.0 |
| GDGLFJNP_93 | 1.0 | 0.0 | 1.0 |
| GDGLFJNP_94 | 1.0 | 0.0 | 1.0 |
| GDGLFJNP_95 | 0.0 | 1.0 | 0.0 |
| GDGLFJNP_96 | 1.0 | 0.0 | 1.0 |
| GDGLFJNP_97 | 1.0 | 0.0 | 1.0 |
| GDGLFJNP_98 | 1.0 | 0.0 | 1.0 |
| GDGLFJNP_99 | 0.0 | 1.0 | 0.0 |
| GDGLFJNP_100 | 0.0 | 1.0 | 0.0 |
| GDGLFJNP_101 | 1.0 | 0.0 | 1.0 |
| GDGLFJNP_102 | 0.0 | 1.0 | 0.0 |
| GDGLFJNP_103 | 0.0 | 1.0 | 0.0 |
| GDGLFJNP_104 | 0.0 | 1.0 | 0.0 |
| GDGLFJNP_105 | 0.0 | 1.0 | 0.0 |
| GDGLFJNP_107 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| GDGLFJNP_2 | 21377 | 44568 | False | Unknown | VOG5722, VOG6488, VOG5721, VOG6031, VOG6524, VOG6246, VOG6941, VOG6036, VOG7629, VOG7628, VOG5534, VOG6540, VOG10609, VOG9226, VOG0648, VOG0753, VOG0054 |
Phigaro v2.4.0 (Database: Jan. 2024 release)