Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 1 | 0 | 1 | 1.41 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| IBMBDDLI_63 | 199 | 2124 | tet(W) | ARO:3000194 | tet(W) | 96.71 | 100.31 | AJ222769.3 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| IBMBDDLI_63 | 212 | 2124 | tet(W) | Doxycycline, Tetracycline, Minocycline | 98.85 | 99.64 | FN396364 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| IBMBDDLI_63 | 211 | 2124 | tet(W) | tetracycline resistance ribosomal protection protein Tet(W) | BLASTX | 99.53 | 99.84 | WP_003672618.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| IBMBDDLI_4 | 25160 | 24966 | CspA | 9.68e-29 | cold shock protein | 84.61 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| IBMBDDLI_51 | 10454 | 11190 | rep30 | 740 / 777 | 81.08 | CP006013 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| IBMBDDLI_1 | 0.0 | 1.0 | 0.0 |
| IBMBDDLI_2 | 0.0 | 1.0 | 0.0 |
| IBMBDDLI_3 | 0.0 | 1.0 | 0.0 |
| IBMBDDLI_4 | 0.0 | 1.0 | 0.0 |
| IBMBDDLI_5 | 0.0 | 1.0 | 0.0 |
| IBMBDDLI_6 | 0.0 | 1.0 | 0.0 |
| IBMBDDLI_7 | 0.0 | 1.0 | 0.0 |
| IBMBDDLI_8 | 0.0 | 1.0 | 0.0 |
| IBMBDDLI_9 | 0.0 | 1.0 | 0.0 |
| IBMBDDLI_10 | 0.0 | 1.0 | 0.0 |
| IBMBDDLI_11 | 1.0 | 0.0 | 1.0 |
| IBMBDDLI_12 | 0.0 | 1.0 | 0.0 |
| IBMBDDLI_13 | 0.0 | 1.0 | 0.0 |
| IBMBDDLI_14 | 0.0 | 1.0 | 0.0 |
| IBMBDDLI_15 | 0.0 | 1.0 | 0.0 |
| IBMBDDLI_16 | 0.0 | 1.0 | 0.0 |
| IBMBDDLI_17 | 0.0 | 1.0 | 0.0 |
| IBMBDDLI_18 | 0.0 | 1.0 | 0.0 |
| IBMBDDLI_19 | 0.0 | 1.0 | 0.0 |
| IBMBDDLI_20 | 0.0 | 1.0 | 0.0 |
| IBMBDDLI_21 | 0.0 | 1.0 | 0.0 |
| IBMBDDLI_22 | 0.0 | 1.0 | 0.0 |
| IBMBDDLI_23 | 0.0 | 1.0 | 0.0 |
| IBMBDDLI_24 | 1.0 | 0.0 | 1.0 |
| IBMBDDLI_25 | 0.0 | 1.0 | 0.0 |
| IBMBDDLI_26 | 0.0 | 1.0 | 0.0 |
| IBMBDDLI_27 | 0.0 | 1.0 | 0.0 |
| IBMBDDLI_28 | 0.0 | 1.0 | 0.0 |
| IBMBDDLI_29 | 0.0 | 1.0 | 0.0 |
| IBMBDDLI_30 | 0.0 | 1.0 | 0.0 |
| IBMBDDLI_31 | 0.0 | 1.0 | 0.0 |
| IBMBDDLI_32 | 0.0 | 1.0 | 0.0 |
| IBMBDDLI_33 | 0.0 | 1.0 | 0.0 |
| IBMBDDLI_34 | 0.0 | 1.0 | 0.0 |
| IBMBDDLI_35 | 0.0 | 1.0 | 0.0 |
| IBMBDDLI_36 | 0.0 | 1.0 | 0.0 |
| IBMBDDLI_37 | 0.0 | 1.0 | 0.0 |
| IBMBDDLI_38 | 0.0 | 1.0 | 0.0 |
| IBMBDDLI_39 | 0.0 | 1.0 | 0.0 |
| IBMBDDLI_40 | 0.0 | 1.0 | 0.0 |
| IBMBDDLI_41 | 0.0 | 1.0 | 0.0 |
| IBMBDDLI_42 | 0.0 | 1.0 | 0.0 |
| IBMBDDLI_43 | 0.0 | 1.0 | 0.0 |
| IBMBDDLI_44 | 1.0 | 0.0 | 1.0 |
| IBMBDDLI_45 | 0.0 | 1.0 | 0.0 |
| IBMBDDLI_46 | 0.0 | 1.0 | 0.0 |
| IBMBDDLI_47 | 0.0 | 1.0 | 0.0 |
| IBMBDDLI_48 | 0.0 | 1.0 | 0.0 |
| IBMBDDLI_49 | 0.0 | 1.0 | 0.0 |
| IBMBDDLI_50 | 0.0 | 1.0 | 0.0 |
| IBMBDDLI_51 | 1.0 | 0.0 | 1.0 |
| IBMBDDLI_52 | 0.0 | 1.0 | 0.0 |
| IBMBDDLI_53 | 0.0 | 1.0 | 0.0 |
| IBMBDDLI_54 | 0.0 | 1.0 | 0.0 |
| IBMBDDLI_55 | 0.0 | 1.0 | 0.0 |
| IBMBDDLI_56 | 0.0 | 1.0 | 0.0 |
| IBMBDDLI_57 | 1.0 | 0.0 | 1.0 |
| IBMBDDLI_58 | 0.0 | 1.0 | 0.0 |
| IBMBDDLI_59 | 0.0 | 1.0 | 0.0 |
| IBMBDDLI_60 | 1.0 | 0.0 | 1.0 |
| IBMBDDLI_61 | 0.0 | 1.0 | 0.0 |
| IBMBDDLI_62 | 0.0 | 1.0 | 0.0 |
| IBMBDDLI_63 | 0.0 | 1.0 | 0.0 |
| IBMBDDLI_64 | 0.0 | 1.0 | 0.0 |
| IBMBDDLI_65 | 1.0 | 0.0 | 1.0 |
| IBMBDDLI_66 | 0.0 | 1.0 | 0.0 |
| IBMBDDLI_67 | 0.0 | 1.0 | 0.0 |
| IBMBDDLI_68 | 0.0 | 1.0 | 0.0 |
| IBMBDDLI_70 | 0.0 | 1.0 | 0.0 |
| IBMBDDLI_71 | 0.0 | 1.0 | 0.0 |
| IBMBDDLI_72 | 1.0 | 0.0 | 1.0 |
| IBMBDDLI_73 | 1.0 | 0.0 | 1.0 |
| IBMBDDLI_74 | 0.0 | 1.0 | 0.0 |
| IBMBDDLI_75 | 0.0 | 1.0 | 0.0 |
| IBMBDDLI_77 | 0.0 | 1.0 | 0.0 |
| IBMBDDLI_78 | 0.0 | 1.0 | 0.0 |
| IBMBDDLI_79 | 1.0 | 0.0 | 1.0 |
| IBMBDDLI_80 | 1.0 | 0.0 | 1.0 |
| IBMBDDLI_81 | 1.0 | 0.0 | 1.0 |
| IBMBDDLI_82 | 1.0 | 0.0 | 1.0 |
| IBMBDDLI_83 | 1.0 | 0.0 | 1.0 |
| IBMBDDLI_85 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| IBMBDDLI_10 | 6138 | 37755 | False | Siphoviridae | VOG4856, VOG7893, VOG4619, VOG0801, VOG0701, VOG0698, VOG0697, VOG0696, VOG0695, VOG4572, VOG4555, VOG5847, VOG0692, VOG0691, VOG10227, VOG3699, VOG0198, VOG4567, VOG6214, VOG0536, VOG0189, VOG8647, VOG0226, VOG0514, VOG0906, VOG9708, VOG8611 |
| IBMBDDLI_11 | 13755 | 44339 | False | Siphoviridae | VOG0275, VOG5998, VOG5562, VOG5317, VOG0686, VOG6140, VOG7111, VOG0198, VOG0866, VOG4841, VOG4581, VOG4544, VOG0202, VOG4556, VOG4568, VOG4553, VOG0204, VOG4589, VOG0539, VOG0704, VOG4586, VOG2225, VOG9471, VOG6163, VOG0801, VOG3462, VOG4405, VOG8438, VOG0641, VOG0703, VOG4824, VOG8904 |
Phigaro v2.4.0 (Database: Jan. 2024 release)