Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 0 | 1 | 3.16 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CDFFHLFE_48 | 8729 | 10648 | tet(W) | ARO:3000194 | tet(W) | 92.48 | 100.00 | AJ222769.3 |
| CDFFHLFE_69 | 2793 | 3539 | ErmB | ARO:3000375 | ErmB | 97.57 | 100.00 | AF242872.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| CDFFHLFE_48 | 7174 | 8550 | tet(L) | Doxycycline, Tetracycline, Doxycycline, Tetracycline, Minocycline, Tigecycline | 99.49 | 100.00 | AY081910 |
| CDFFHLFE_69 | 2805 | 3539 | erm(B) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.32 | 97.61 | AF080450 |
| CDFFHLFE_48 | 8744 | 10648 | tet(O/W/O)-2 | Doxycycline, Tetracycline, Minocycline | 89.21 | 99.01 | AY196920 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CDFFHLFE_69 | 2799 | 3539 | erm(B) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B) | BLASTX | 98.79 | 99.60 | WP_063844850.1 |
| CDFFHLFE_48 | 7177 | 8550 | tet(L) | tetracycline efflux MFS transporter Tet(L) | BLASTX | 98.69 | 100.00 | WP_002294500.1 |
| CDFFHLFE_48 | 8735 | 10648 | tet(W) | tetracycline resistance ribosomal protection protein Tet(W) | BLASTX | 94.51 | 99.84 | WP_003672618.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| CDFFHLFE_4 | 51189 | 51383 | CspA | 1.11e-28 | cold shock protein | 84.61 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| CDFFHLFE_1 | 1.0 | 0.0 | 1.0 |
| CDFFHLFE_2 | 0.0 | 1.0 | 0.0 |
| CDFFHLFE_3 | 0.0 | 1.0 | 0.0 |
| CDFFHLFE_4 | 0.0 | 1.0 | 0.0 |
| CDFFHLFE_5 | 0.0 | 1.0 | 0.0 |
| CDFFHLFE_6 | 0.0 | 1.0 | 0.0 |
| CDFFHLFE_7 | 0.0 | 1.0 | 0.0 |
| CDFFHLFE_8 | 0.0 | 1.0 | 0.0 |
| CDFFHLFE_9 | 1.0 | 0.0 | 1.0 |
| CDFFHLFE_10 | 0.0 | 1.0 | 0.0 |
| CDFFHLFE_11 | 0.0 | 1.0 | 0.0 |
| CDFFHLFE_12 | 0.0 | 1.0 | 0.0 |
| CDFFHLFE_13 | 0.0 | 1.0 | 0.0 |
| CDFFHLFE_14 | 0.0 | 1.0 | 0.0 |
| CDFFHLFE_15 | 0.0 | 1.0 | 0.0 |
| CDFFHLFE_16 | 0.0 | 1.0 | 0.0 |
| CDFFHLFE_17 | 0.0 | 1.0 | 0.0 |
| CDFFHLFE_18 | 0.0 | 1.0 | 0.0 |
| CDFFHLFE_19 | 0.0 | 1.0 | 0.0 |
| CDFFHLFE_20 | 0.0 | 1.0 | 0.0 |
| CDFFHLFE_21 | 0.0 | 1.0 | 0.0 |
| CDFFHLFE_22 | 0.0 | 1.0 | 0.0 |
| CDFFHLFE_23 | 0.0 | 1.0 | 0.0 |
| CDFFHLFE_24 | 0.0 | 1.0 | 0.0 |
| CDFFHLFE_25 | 0.0 | 1.0 | 0.0 |
| CDFFHLFE_26 | 0.0 | 1.0 | 0.0 |
| CDFFHLFE_27 | 0.0 | 1.0 | 0.0 |
| CDFFHLFE_28 | 0.0 | 1.0 | 0.0 |
| CDFFHLFE_29 | 0.0 | 1.0 | 0.0 |
| CDFFHLFE_30 | 0.0 | 1.0 | 0.0 |
| CDFFHLFE_31 | 0.0 | 1.0 | 0.0 |
| CDFFHLFE_32 | 0.0 | 1.0 | 0.0 |
| CDFFHLFE_33 | 0.0 | 1.0 | 0.0 |
| CDFFHLFE_34 | 0.0 | 1.0 | 0.0 |
| CDFFHLFE_35 | 1.0 | 0.0 | 1.0 |
| CDFFHLFE_36 | 0.0 | 1.0 | 0.0 |
| CDFFHLFE_37 | 0.0 | 1.0 | 0.0 |
| CDFFHLFE_38 | 0.0 | 1.0 | 0.0 |
| CDFFHLFE_39 | 0.0 | 1.0 | 0.0 |
| CDFFHLFE_40 | 0.0 | 1.0 | 0.0 |
| CDFFHLFE_41 | 0.0 | 1.0 | 0.0 |
| CDFFHLFE_42 | 1.0 | 0.0 | 1.0 |
| CDFFHLFE_43 | 0.0 | 1.0 | 0.0 |
| CDFFHLFE_44 | 1.0 | 0.0 | 1.0 |
| CDFFHLFE_45 | 0.0 | 1.0 | 0.0 |
| CDFFHLFE_46 | 0.0 | 1.0 | 0.0 |
| CDFFHLFE_47 | 0.0 | 1.0 | 0.0 |
| CDFFHLFE_48 | 1.0 | 0.0 | 1.0 |
| CDFFHLFE_49 | 0.0 | 1.0 | 0.0 |
| CDFFHLFE_50 | 0.0 | 1.0 | 0.0 |
| CDFFHLFE_51 | 0.0 | 1.0 | 0.0 |
| CDFFHLFE_52 | 0.0 | 1.0 | 0.0 |
| CDFFHLFE_53 | 0.0 | 1.0 | 0.0 |
| CDFFHLFE_54 | 0.0 | 1.0 | 0.0 |
| CDFFHLFE_55 | 0.0 | 1.0 | 0.0 |
| CDFFHLFE_56 | 0.0 | 1.0 | 0.0 |
| CDFFHLFE_57 | 0.0 | 1.0 | 0.0 |
| CDFFHLFE_58 | 0.0 | 1.0 | 0.0 |
| CDFFHLFE_59 | 0.0 | 1.0 | 0.0 |
| CDFFHLFE_60 | 0.0 | 1.0 | 0.0 |
| CDFFHLFE_61 | 0.0 | 1.0 | 0.0 |
| CDFFHLFE_62 | 0.0 | 1.0 | 0.0 |
| CDFFHLFE_63 | 0.0 | 1.0 | 0.0 |
| CDFFHLFE_64 | 0.0 | 1.0 | 0.0 |
| CDFFHLFE_65 | 0.0 | 1.0 | 0.0 |
| CDFFHLFE_66 | 0.0 | 1.0 | 0.0 |
| CDFFHLFE_67 | 0.0 | 1.0 | 0.0 |
| CDFFHLFE_68 | 0.0 | 1.0 | 0.0 |
| CDFFHLFE_69 | 1.0 | 0.0 | 1.0 |
| CDFFHLFE_70 | 0.0 | 1.0 | 0.0 |
| CDFFHLFE_71 | 0.0 | 1.0 | 0.0 |
| CDFFHLFE_72 | 0.0 | 1.0 | 0.0 |
| CDFFHLFE_73 | 0.0 | 1.0 | 0.0 |
| CDFFHLFE_74 | 0.0 | 1.0 | 0.0 |
| CDFFHLFE_75 | 1.0 | 0.0 | 1.0 |
| CDFFHLFE_76 | 0.0 | 1.0 | 0.0 |
| CDFFHLFE_77 | 1.0 | 0.0 | 1.0 |
| CDFFHLFE_78 | 1.0 | 0.0 | 1.0 |
| CDFFHLFE_79 | 0.0 | 1.0 | 0.0 |
| CDFFHLFE_80 | 0.0 | 1.0 | 0.0 |
| CDFFHLFE_81 | 0.0 | 1.0 | 0.0 |
| CDFFHLFE_82 | 1.0 | 0.0 | 1.0 |
| CDFFHLFE_83 | 1.0 | 0.0 | 1.0 |
| CDFFHLFE_84 | 1.0 | 0.0 | 1.0 |
| CDFFHLFE_85 | 0.0 | 1.0 | 0.0 |
| CDFFHLFE_86 | 1.0 | 0.0 | 1.0 |
| CDFFHLFE_87 | 1.0 | 0.0 | 1.0 |
| CDFFHLFE_88 | 0.0 | 1.0 | 0.0 |
| CDFFHLFE_89 | 1.0 | 0.0 | 1.0 |
| CDFFHLFE_90 | 1.0 | 0.0 | 1.0 |
| CDFFHLFE_91 | 0.0 | 1.0 | 0.0 |
| CDFFHLFE_92 | 1.0 | 0.0 | 1.0 |
| CDFFHLFE_94 | 0.0 | 1.0 | 0.0 |
| CDFFHLFE_95 | 0.0 | 1.0 | 0.0 |
| CDFFHLFE_96 | 0.0 | 1.0 | 0.0 |
| CDFFHLFE_97 | 0.0 | 1.0 | 0.0 |
| CDFFHLFE_98 | 0.0 | 1.0 | 0.0 |
| CDFFHLFE_99 | 1.0 | 0.0 | 1.0 |
| CDFFHLFE_100 | 1.0 | 0.0 | 1.0 |
| CDFFHLFE_101 | 0.0 | 1.0 | 0.0 |
| CDFFHLFE_102 | 1.0 | 0.0 | 1.0 |
| CDFFHLFE_103 | 1.0 | 0.0 | 1.0 |
| CDFFHLFE_104 | 1.0 | 0.0 | 1.0 |
| CDFFHLFE_106 | 0.0 | 1.0 | 0.0 |
| CDFFHLFE_107 | 0.0 | 1.0 | 0.0 |
| CDFFHLFE_108 | 1.0 | 0.0 | 1.0 |
| CDFFHLFE_109 | 1.0 | 0.0 | 1.0 |
| CDFFHLFE_110 | 1.0 | 0.0 | 1.0 |
| CDFFHLFE_111 | 1.0 | 0.0 | 1.0 |
| CDFFHLFE_112 | 1.0 | 0.0 | 1.0 |
| CDFFHLFE_113 | 0.0 | 1.0 | 0.0 |
| CDFFHLFE_114 | 0.0 | 1.0 | 0.0 |
| CDFFHLFE_115 | 1.0 | 0.0 | 1.0 |
| CDFFHLFE_116 | 1.0 | 0.0 | 1.0 |
| CDFFHLFE_117 | 1.0 | 0.0 | 1.0 |
| CDFFHLFE_118 | 1.0 | 0.0 | 1.0 |
| CDFFHLFE_120 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| CDFFHLFE_1 | 60711 | 80810 | False | Unknown | VOG6488, VOG5721, VOG6031, VOG6524, VOG6246, VOG6941, VOG6036, VOG7629, VOG7628, VOG5534, VOG6540, VOG10609, VOG9226, VOG0648, VOG0753 |
| CDFFHLFE_9 | 2062 | 31945 | False | Siphoviridae | VOG0703, VOG1637, VOG7908, VOG4663, VOG0725, VOG4205, VOG3462, VOG0801, VOG6163, VOG9471, VOG2225, VOG4586, VOG0704, VOG0539, VOG4589, VOG0204, VOG4553, VOG4568, VOG4556, VOG4544, VOG4581, VOG4841, VOG0822, VOG0195, VOG0198, VOG7111, VOG0686, VOG5317, VOG5280 |
Phigaro v2.4.0 (Database: Jan. 2024 release)