Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| CBCOMBOO_7 | 31844 | 32038 | CspA | 8.27e-29 | cold shock protein | 84.61 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| CBCOMBOO_40 | 3845 | 4624 | repUS36 | 780 / 780 | 99.87 | AJ488494 |
| CBCOMBOO_62 | 2190 | 3220 | repUS67 | 1031 / 1039 | 96.61 | CP006012 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| CBCOMBOO_1 | 0.0 | 1.0 | 0.0 |
| CBCOMBOO_2 | 0.0 | 1.0 | 0.0 |
| CBCOMBOO_3 | 0.0 | 1.0 | 0.0 |
| CBCOMBOO_4 | 0.0 | 1.0 | 0.0 |
| CBCOMBOO_5 | 0.0 | 1.0 | 0.0 |
| CBCOMBOO_6 | 0.0 | 1.0 | 0.0 |
| CBCOMBOO_7 | 0.0 | 1.0 | 0.0 |
| CBCOMBOO_8 | 0.0 | 1.0 | 0.0 |
| CBCOMBOO_9 | 0.0 | 1.0 | 0.0 |
| CBCOMBOO_10 | 0.0 | 1.0 | 0.0 |
| CBCOMBOO_11 | 0.0 | 1.0 | 0.0 |
| CBCOMBOO_12 | 0.0 | 1.0 | 0.0 |
| CBCOMBOO_13 | 0.0 | 1.0 | 0.0 |
| CBCOMBOO_14 | 0.0 | 1.0 | 0.0 |
| CBCOMBOO_15 | 0.0 | 1.0 | 0.0 |
| CBCOMBOO_16 | 0.0 | 1.0 | 0.0 |
| CBCOMBOO_17 | 0.0 | 1.0 | 0.0 |
| CBCOMBOO_18 | 0.0 | 1.0 | 0.0 |
| CBCOMBOO_19 | 0.0 | 1.0 | 0.0 |
| CBCOMBOO_20 | 0.0 | 1.0 | 0.0 |
| CBCOMBOO_21 | 0.0 | 1.0 | 0.0 |
| CBCOMBOO_22 | 0.0 | 1.0 | 0.0 |
| CBCOMBOO_23 | 0.0 | 1.0 | 0.0 |
| CBCOMBOO_24 | 0.0 | 1.0 | 0.0 |
| CBCOMBOO_25 | 0.0 | 1.0 | 0.0 |
| CBCOMBOO_26 | 0.0 | 1.0 | 0.0 |
| CBCOMBOO_27 | 0.0 | 1.0 | 0.0 |
| CBCOMBOO_28 | 0.0 | 1.0 | 0.0 |
| CBCOMBOO_29 | 0.0 | 1.0 | 0.0 |
| CBCOMBOO_30 | 1.0 | 0.0 | 1.0 |
| CBCOMBOO_31 | 0.0 | 1.0 | 0.0 |
| CBCOMBOO_32 | 0.0 | 1.0 | 0.0 |
| CBCOMBOO_33 | 0.0 | 1.0 | 0.0 |
| CBCOMBOO_34 | 0.0 | 1.0 | 0.0 |
| CBCOMBOO_35 | 0.0 | 1.0 | 0.0 |
| CBCOMBOO_36 | 0.0 | 1.0 | 0.0 |
| CBCOMBOO_37 | 0.0 | 1.0 | 0.0 |
| CBCOMBOO_38 | 0.0 | 1.0 | 0.0 |
| CBCOMBOO_39 | 0.0 | 1.0 | 0.0 |
| CBCOMBOO_40 | 1.0 | 0.0 | 1.0 |
| CBCOMBOO_41 | 0.0 | 1.0 | 0.0 |
| CBCOMBOO_42 | 0.0 | 1.0 | 0.0 |
| CBCOMBOO_43 | 0.0 | 1.0 | 0.0 |
| CBCOMBOO_44 | 0.0 | 1.0 | 0.0 |
| CBCOMBOO_45 | 0.0 | 1.0 | 0.0 |
| CBCOMBOO_46 | 0.0 | 1.0 | 0.0 |
| CBCOMBOO_47 | 0.0 | 1.0 | 0.0 |
| CBCOMBOO_48 | 0.0 | 1.0 | 0.0 |
| CBCOMBOO_49 | 0.0 | 1.0 | 0.0 |
| CBCOMBOO_50 | 0.0 | 1.0 | 0.0 |
| CBCOMBOO_51 | 0.0 | 1.0 | 0.0 |
| CBCOMBOO_52 | 1.0 | 0.0 | 1.0 |
| CBCOMBOO_53 | 0.0 | 1.0 | 0.0 |
| CBCOMBOO_54 | 0.0 | 1.0 | 0.0 |
| CBCOMBOO_55 | 0.0 | 1.0 | 0.0 |
| CBCOMBOO_56 | 0.0 | 1.0 | 0.0 |
| CBCOMBOO_57 | 0.0 | 1.0 | 0.0 |
| CBCOMBOO_58 | 0.0 | 1.0 | 0.0 |
| CBCOMBOO_59 | 1.0 | 0.0 | 1.0 |
| CBCOMBOO_60 | 0.0 | 1.0 | 0.0 |
| CBCOMBOO_61 | 0.0 | 1.0 | 0.0 |
| CBCOMBOO_62 | 1.0 | 0.0 | 1.0 |
| CBCOMBOO_63 | 0.0 | 1.0 | 0.0 |
| CBCOMBOO_64 | 0.0 | 1.0 | 0.0 |
| CBCOMBOO_65 | 1.0 | 0.0 | 1.0 |
| CBCOMBOO_66 | 0.0 | 1.0 | 0.0 |
| CBCOMBOO_67 | 0.0 | 1.0 | 0.0 |
| CBCOMBOO_69 | 0.0 | 1.0 | 0.0 |
| CBCOMBOO_70 | 0.0 | 1.0 | 0.0 |
| CBCOMBOO_71 | 0.0 | 1.0 | 0.0 |
| CBCOMBOO_72 | 1.0 | 0.0 | 1.0 |
| CBCOMBOO_73 | 1.0 | 0.0 | 1.0 |
| CBCOMBOO_74 | 0.0 | 1.0 | 0.0 |
| CBCOMBOO_75 | 0.0 | 1.0 | 0.0 |
| CBCOMBOO_76 | 0.0 | 1.0 | 0.0 |
| CBCOMBOO_77 | 1.0 | 0.0 | 1.0 |
| CBCOMBOO_78 | 0.0 | 1.0 | 0.0 |
| CBCOMBOO_79 | 0.0 | 1.0 | 0.0 |
| CBCOMBOO_80 | 1.0 | 0.0 | 1.0 |
| CBCOMBOO_82 | 0.0 | 1.0 | 0.0 |
| CBCOMBOO_83 | 1.0 | 0.0 | 1.0 |
| CBCOMBOO_84 | 0.0 | 1.0 | 0.0 |
| CBCOMBOO_85 | 1.0 | 0.0 | 1.0 |
| CBCOMBOO_86 | 0.0 | 1.0 | 0.0 |
| CBCOMBOO_87 | 0.0 | 1.0 | 0.0 |
| CBCOMBOO_88 | 0.0 | 1.0 | 0.0 |
| CBCOMBOO_89 | 0.0 | 1.0 | 0.0 |
| CBCOMBOO_90 | 0.0 | 1.0 | 0.0 |
| CBCOMBOO_91 | 1.0 | 0.0 | 1.0 |
| CBCOMBOO_93 | 1.0 | 0.0 | 1.0 |
| CBCOMBOO_94 | 0.0 | 1.0 | 0.0 |
| CBCOMBOO_95 | 0.0 | 1.0 | 0.0 |
| CBCOMBOO_96 | 0.0 | 1.0 | 0.0 |
| CBCOMBOO_97 | 1.0 | 0.0 | 1.0 |
| CBCOMBOO_98 | 1.0 | 0.0 | 1.0 |
| CBCOMBOO_99 | 1.0 | 0.0 | 1.0 |
| CBCOMBOO_100 | 0.0 | 1.0 | 0.0 |
| CBCOMBOO_101 | 0.0 | 1.0 | 0.0 |
| CBCOMBOO_102 | 0.0 | 1.0 | 0.0 |
| CBCOMBOO_103 | 1.0 | 0.0 | 1.0 |
| CBCOMBOO_104 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| CBCOMBOO_1 | 7516 | 41725 | False | Siphoviridae | VOG10195, VOG2228, VOG1638, VOG0321, VOG8222, VOG4548, VOG0322, VOG6545, VOG4632, VOG4609, VOG0327, VOG3307, VOG1183, VOG7910, VOG3307, VOG0198, VOG0796, VOG10227, VOG0720, VOG4564, VOG7533, VOG4555, VOG1319, VOG4713, VOG0723, VOG5660, VOG0724, VOG0799, VOG0725, VOG0800, VOG4545, VOG4633, VOG4910, VOG0476, VOG4856, VOG6379, VOG4334, VOG4705, VOG1637, VOG0054, VOG4824 |
Phigaro v2.4.0 (Database: Jan. 2024 release)