Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 1 | 0 | 1 | 1.41 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| EPIPLKLD_59 | 199 | 2124 | tet(W) | ARO:3000194 | tet(W) | 96.71 | 100.31 | AJ222769.3 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| EPIPLKLD_59 | 212 | 2124 | tet(W) | Doxycycline, Tetracycline, Minocycline | 98.85 | 99.64 | FN396364 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| EPIPLKLD_59 | 211 | 2124 | tet(W) | tetracycline resistance ribosomal protection protein Tet(W) | BLASTX | 99.53 | 99.84 | WP_003672618.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| EPIPLKLD_5 | 41901 | 42095 | CspA | 9.70e-29 | cold shock protein | 84.61 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| EPIPLKLD_23 | 22990 | 24028 | repUS67 | 1040 / 1039 | 97.88 | CP006012 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| EPIPLKLD_1 | 0.0 | 1.0 | 0.0 |
| EPIPLKLD_2 | 0.0 | 1.0 | 0.0 |
| EPIPLKLD_3 | 0.0 | 1.0 | 0.0 |
| EPIPLKLD_4 | 0.0 | 1.0 | 0.0 |
| EPIPLKLD_5 | 0.0 | 1.0 | 0.0 |
| EPIPLKLD_6 | 0.0 | 1.0 | 0.0 |
| EPIPLKLD_7 | 0.0 | 1.0 | 0.0 |
| EPIPLKLD_8 | 0.0 | 1.0 | 0.0 |
| EPIPLKLD_9 | 0.0 | 1.0 | 0.0 |
| EPIPLKLD_10 | 0.0 | 1.0 | 0.0 |
| EPIPLKLD_11 | 0.0 | 1.0 | 0.0 |
| EPIPLKLD_12 | 0.0 | 1.0 | 0.0 |
| EPIPLKLD_13 | 0.0 | 1.0 | 0.0 |
| EPIPLKLD_14 | 0.0 | 1.0 | 0.0 |
| EPIPLKLD_15 | 0.0 | 1.0 | 0.0 |
| EPIPLKLD_16 | 0.0 | 1.0 | 0.0 |
| EPIPLKLD_17 | 0.0 | 1.0 | 0.0 |
| EPIPLKLD_18 | 0.0 | 1.0 | 0.0 |
| EPIPLKLD_19 | 0.0 | 1.0 | 0.0 |
| EPIPLKLD_20 | 0.0 | 1.0 | 0.0 |
| EPIPLKLD_21 | 0.0 | 1.0 | 0.0 |
| EPIPLKLD_22 | 0.0 | 1.0 | 0.0 |
| EPIPLKLD_23 | 1.0 | 0.0 | 1.0 |
| EPIPLKLD_24 | 0.0 | 1.0 | 0.0 |
| EPIPLKLD_25 | 1.0 | 0.0 | 1.0 |
| EPIPLKLD_26 | 0.0 | 1.0 | 0.0 |
| EPIPLKLD_27 | 0.0 | 1.0 | 0.0 |
| EPIPLKLD_28 | 0.0 | 1.0 | 0.0 |
| EPIPLKLD_29 | 0.0 | 1.0 | 0.0 |
| EPIPLKLD_30 | 0.0 | 1.0 | 0.0 |
| EPIPLKLD_31 | 0.0 | 1.0 | 0.0 |
| EPIPLKLD_32 | 0.0 | 1.0 | 0.0 |
| EPIPLKLD_33 | 0.0 | 1.0 | 0.0 |
| EPIPLKLD_34 | 0.0 | 1.0 | 0.0 |
| EPIPLKLD_35 | 0.0 | 1.0 | 0.0 |
| EPIPLKLD_36 | 0.0 | 1.0 | 0.0 |
| EPIPLKLD_37 | 0.0 | 1.0 | 0.0 |
| EPIPLKLD_38 | 0.0 | 1.0 | 0.0 |
| EPIPLKLD_39 | 0.0 | 1.0 | 0.0 |
| EPIPLKLD_40 | 0.0 | 1.0 | 0.0 |
| EPIPLKLD_41 | 1.0 | 0.0 | 1.0 |
| EPIPLKLD_42 | 1.0 | 0.0 | 1.0 |
| EPIPLKLD_43 | 1.0 | 0.0 | 1.0 |
| EPIPLKLD_44 | 0.0 | 1.0 | 0.0 |
| EPIPLKLD_45 | 1.0 | 0.0 | 1.0 |
| EPIPLKLD_46 | 0.0 | 1.0 | 0.0 |
| EPIPLKLD_47 | 1.0 | 0.0 | 1.0 |
| EPIPLKLD_48 | 0.0 | 1.0 | 0.0 |
| EPIPLKLD_49 | 0.0 | 1.0 | 0.0 |
| EPIPLKLD_50 | 0.0 | 1.0 | 0.0 |
| EPIPLKLD_51 | 0.0 | 1.0 | 0.0 |
| EPIPLKLD_52 | 0.0 | 1.0 | 0.0 |
| EPIPLKLD_53 | 0.0 | 1.0 | 0.0 |
| EPIPLKLD_54 | 0.0 | 1.0 | 0.0 |
| EPIPLKLD_55 | 0.0 | 1.0 | 0.0 |
| EPIPLKLD_56 | 1.0 | 0.0 | 1.0 |
| EPIPLKLD_57 | 0.0 | 1.0 | 0.0 |
| EPIPLKLD_58 | 0.0 | 1.0 | 0.0 |
| EPIPLKLD_59 | 0.0 | 1.0 | 0.0 |
| EPIPLKLD_60 | 0.0 | 1.0 | 0.0 |
| EPIPLKLD_61 | 0.0 | 1.0 | 0.0 |
| EPIPLKLD_62 | 1.0 | 0.0 | 1.0 |
| EPIPLKLD_63 | 1.0 | 0.0 | 1.0 |
| EPIPLKLD_64 | 0.0 | 1.0 | 0.0 |
| EPIPLKLD_65 | 1.0 | 0.0 | 1.0 |
| EPIPLKLD_66 | 1.0 | 0.0 | 1.0 |
| EPIPLKLD_67 | 0.0 | 1.0 | 0.0 |
| EPIPLKLD_68 | 0.0 | 1.0 | 0.0 |
| EPIPLKLD_70 | 1.0 | 0.0 | 1.0 |
| EPIPLKLD_71 | 0.0 | 1.0 | 0.0 |
| EPIPLKLD_72 | 0.0 | 1.0 | 0.0 |
| EPIPLKLD_73 | 0.0 | 1.0 | 0.0 |
| EPIPLKLD_74 | 1.0 | 0.0 | 1.0 |
| EPIPLKLD_75 | 1.0 | 0.0 | 1.0 |
| EPIPLKLD_77 | 1.0 | 0.0 | 1.0 |
| EPIPLKLD_78 | 0.0 | 1.0 | 0.0 |
| EPIPLKLD_79 | 0.0 | 1.0 | 0.0 |
| EPIPLKLD_80 | 0.0 | 1.0 | 0.0 |
| EPIPLKLD_81 | 1.0 | 0.0 | 1.0 |
| EPIPLKLD_82 | 1.0 | 0.0 | 1.0 |
| EPIPLKLD_83 | 1.0 | 0.0 | 1.0 |
| EPIPLKLD_86 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| EPIPLKLD_9 | 13433 | 44401 | True | Myoviridae / Siphoviridae | VOG4571, VOG0443, VOG4548, VOG0221, VOG0221, VOG9409, VOG9502, VOG0641, VOG4589, VOG0204, VOG4553, VOG4573, VOG4556, VOG1886, VOG1448, VOG4571, VOG4581, VOG0198, VOG4548, VOG0327, VOG4606, VOG4606, VOG0026, VOG0021, VOG1047, VOG7438, VOG0052 |
Phigaro v2.4.0 (Database: Jan. 2024 release)