Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| HCPBGPIE_7 | 1551 | 1357 | CspA | 7.63e-29 | cold shock protein | 84.61 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| HCPBGPIE_1 | 0.0 | 1.0 | 0.0 |
| HCPBGPIE_2 | 0.0 | 1.0 | 0.0 |
| HCPBGPIE_3 | 0.0 | 1.0 | 0.0 |
| HCPBGPIE_4 | 0.0 | 1.0 | 0.0 |
| HCPBGPIE_5 | 0.0 | 1.0 | 0.0 |
| HCPBGPIE_6 | 0.0 | 1.0 | 0.0 |
| HCPBGPIE_7 | 0.0 | 1.0 | 0.0 |
| HCPBGPIE_8 | 1.0 | 0.0 | 1.0 |
| HCPBGPIE_9 | 0.0 | 1.0 | 0.0 |
| HCPBGPIE_10 | 0.0 | 1.0 | 0.0 |
| HCPBGPIE_11 | 0.0 | 1.0 | 0.0 |
| HCPBGPIE_12 | 0.0 | 1.0 | 0.0 |
| HCPBGPIE_13 | 0.0 | 1.0 | 0.0 |
| HCPBGPIE_14 | 0.0 | 1.0 | 0.0 |
| HCPBGPIE_15 | 0.0 | 1.0 | 0.0 |
| HCPBGPIE_16 | 0.0 | 1.0 | 0.0 |
| HCPBGPIE_17 | 0.0 | 1.0 | 0.0 |
| HCPBGPIE_18 | 0.0 | 1.0 | 0.0 |
| HCPBGPIE_19 | 0.0 | 1.0 | 0.0 |
| HCPBGPIE_20 | 0.0 | 1.0 | 0.0 |
| HCPBGPIE_21 | 0.0 | 1.0 | 0.0 |
| HCPBGPIE_22 | 0.0 | 1.0 | 0.0 |
| HCPBGPIE_23 | 0.0 | 1.0 | 0.0 |
| HCPBGPIE_24 | 0.0 | 1.0 | 0.0 |
| HCPBGPIE_25 | 0.0 | 1.0 | 0.0 |
| HCPBGPIE_26 | 0.0 | 1.0 | 0.0 |
| HCPBGPIE_27 | 0.0 | 1.0 | 0.0 |
| HCPBGPIE_28 | 0.0 | 1.0 | 0.0 |
| HCPBGPIE_29 | 0.0 | 1.0 | 0.0 |
| HCPBGPIE_30 | 0.0 | 1.0 | 0.0 |
| HCPBGPIE_31 | 0.0 | 1.0 | 0.0 |
| HCPBGPIE_32 | 0.0 | 1.0 | 0.0 |
| HCPBGPIE_33 | 1.0 | 0.0 | 1.0 |
| HCPBGPIE_34 | 0.0 | 1.0 | 0.0 |
| HCPBGPIE_35 | 1.0 | 0.0 | 1.0 |
| HCPBGPIE_36 | 0.0 | 1.0 | 0.0 |
| HCPBGPIE_37 | 0.0 | 1.0 | 0.0 |
| HCPBGPIE_38 | 1.0 | 0.0 | 1.0 |
| HCPBGPIE_39 | 0.0 | 1.0 | 0.0 |
| HCPBGPIE_40 | 0.0 | 1.0 | 0.0 |
| HCPBGPIE_41 | 0.0 | 1.0 | 0.0 |
| HCPBGPIE_42 | 0.0 | 1.0 | 0.0 |
| HCPBGPIE_43 | 0.0 | 1.0 | 0.0 |
| HCPBGPIE_44 | 0.0 | 1.0 | 0.0 |
| HCPBGPIE_45 | 0.0 | 1.0 | 0.0 |
| HCPBGPIE_46 | 0.0 | 1.0 | 0.0 |
| HCPBGPIE_47 | 0.0 | 1.0 | 0.0 |
| HCPBGPIE_48 | 0.0 | 1.0 | 0.0 |
| HCPBGPIE_49 | 0.0 | 1.0 | 0.0 |
| HCPBGPIE_50 | 0.0 | 1.0 | 0.0 |
| HCPBGPIE_51 | 0.0 | 1.0 | 0.0 |
| HCPBGPIE_52 | 0.0 | 1.0 | 0.0 |
| HCPBGPIE_53 | 0.0 | 1.0 | 0.0 |
| HCPBGPIE_54 | 0.0 | 1.0 | 0.0 |
| HCPBGPIE_55 | 0.0 | 1.0 | 0.0 |
| HCPBGPIE_56 | 1.0 | 0.0 | 1.0 |
| HCPBGPIE_57 | 0.0 | 1.0 | 0.0 |
| HCPBGPIE_58 | 0.0 | 1.0 | 0.0 |
| HCPBGPIE_59 | 0.0 | 1.0 | 0.0 |
| HCPBGPIE_60 | 0.0 | 1.0 | 0.0 |
| HCPBGPIE_61 | 0.0 | 1.0 | 0.0 |
| HCPBGPIE_62 | 0.0 | 1.0 | 0.0 |
| HCPBGPIE_63 | 0.0 | 1.0 | 0.0 |
| HCPBGPIE_64 | 0.0 | 1.0 | 0.0 |
| HCPBGPIE_65 | 0.0 | 1.0 | 0.0 |
| HCPBGPIE_66 | 0.0 | 1.0 | 0.0 |
| HCPBGPIE_67 | 0.0 | 1.0 | 0.0 |
| HCPBGPIE_68 | 0.0 | 1.0 | 0.0 |
| HCPBGPIE_70 | 0.0 | 1.0 | 0.0 |
| HCPBGPIE_71 | 0.0 | 1.0 | 0.0 |
| HCPBGPIE_72 | 1.0 | 0.0 | 1.0 |
| HCPBGPIE_73 | 0.0 | 1.0 | 0.0 |
| HCPBGPIE_74 | 0.0 | 1.0 | 0.0 |
| HCPBGPIE_75 | 0.0 | 1.0 | 0.0 |
| HCPBGPIE_76 | 0.0 | 1.0 | 0.0 |
| HCPBGPIE_77 | 0.0 | 1.0 | 0.0 |
| HCPBGPIE_78 | 0.0 | 1.0 | 0.0 |
| HCPBGPIE_79 | 0.0 | 1.0 | 0.0 |
| HCPBGPIE_80 | 1.0 | 0.0 | 1.0 |
| HCPBGPIE_81 | 0.0 | 1.0 | 0.0 |
| HCPBGPIE_82 | 0.0 | 1.0 | 0.0 |
| HCPBGPIE_83 | 1.0 | 0.0 | 1.0 |
| HCPBGPIE_85 | 1.0 | 0.0 | 1.0 |
| HCPBGPIE_86 | 0.0 | 1.0 | 0.0 |
| HCPBGPIE_87 | 0.0 | 1.0 | 0.0 |
| HCPBGPIE_88 | 0.0 | 1.0 | 0.0 |
| HCPBGPIE_89 | 0.0 | 1.0 | 0.0 |
| HCPBGPIE_91 | 1.0 | 0.0 | 1.0 |
| HCPBGPIE_92 | 1.0 | 0.0 | 1.0 |
| HCPBGPIE_93 | 1.0 | 0.0 | 1.0 |
| HCPBGPIE_94 | 0.0 | 1.0 | 0.0 |
| HCPBGPIE_95 | 1.0 | 0.0 | 1.0 |
| HCPBGPIE_96 | 0.0 | 1.0 | 0.0 |
| HCPBGPIE_97 | 1.0 | 0.0 | 1.0 |
| HCPBGPIE_98 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| HCPBGPIE_1 | 39945 | 69654 | False | Siphoviridae | VOG0054, VOG1637, VOG9998, VOG4705, VOG4334, VOG4856, VOG9997, VOG1050, VOG10972, VOG3462, VOG0801, VOG6163, VOG0660, VOG0209, VOG0207, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556, VOG0202, VOG1886, VOG4581, VOG4841, VOG7352, VOG0195, VOG6793, VOG0198 |
| HCPBGPIE_8 | 2668 | 30442 | False | Siphoviridae | VOG8904, VOG4824, VOG0703, VOG1637, VOG4705, VOG8438, VOG4405, VOG3462, VOG0801, VOG6163, VOG9471, VOG2225, VOG4586, VOG0704, VOG0539, VOG4589, VOG0204, VOG4553, VOG4568, VOG4556, VOG0202, VOG4544, VOG4581, VOG4841, VOG0866, VOG0198, VOG7111 |
Phigaro v2.4.0 (Database: Jan. 2024 release)