Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 0 | 1 | 3.16 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| JAGELDOB_49 | 4021 | 5940 | tet(W) | ARO:3000194 | tet(W) | 92.48 | 100.00 | AJ222769.3 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| JAGELDOB_49 | 2466 | 3842 | tet(L) | Doxycycline, Tetracycline, Minocycline, Tigecycline, Doxycycline, Tetracycline | 99.49 | 100.00 | AY081910 |
| JAGELDOB_59 | 1 | 582 | erm(B) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.48 | 78.86 | JN899585 |
| JAGELDOB_49 | 4036 | 5940 | tet(O/W/O)-2 | Doxycycline, Tetracycline, Minocycline | 89.26 | 99.01 | AY196920 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| JAGELDOB_59 | 1 | 582 | erm(B) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B) | PARTIAL_CONTIG_ENDX | 98.97 | 78.23 | WP_063844850.1 |
| JAGELDOB_49 | 2469 | 3842 | tet(L) | tetracycline efflux MFS transporter Tet(L) | BLASTX | 98.69 | 100.00 | WP_002294500.1 |
| JAGELDOB_49 | 4027 | 5940 | tet(W) | tetracycline resistance ribosomal protection protein Tet(W) | BLASTX | 94.51 | 99.84 | WP_003672618.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| JAGELDOB_6 | 25346 | 25152 | CspA | 9.71e-29 | cold shock protein | 84.61 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| JAGELDOB_23 | 2477 | 3507 | repUS67 | 1031 / 1039 | 94.96 | CP006012 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| JAGELDOB_1 | 0.0 | 1.0 | 0.0 |
| JAGELDOB_2 | 0.0 | 1.0 | 0.0 |
| JAGELDOB_3 | 0.0 | 1.0 | 0.0 |
| JAGELDOB_4 | 0.0 | 1.0 | 0.0 |
| JAGELDOB_5 | 0.0 | 1.0 | 0.0 |
| JAGELDOB_6 | 0.0 | 1.0 | 0.0 |
| JAGELDOB_7 | 0.0 | 1.0 | 0.0 |
| JAGELDOB_8 | 0.0 | 1.0 | 0.0 |
| JAGELDOB_9 | 0.0 | 1.0 | 0.0 |
| JAGELDOB_10 | 0.0 | 1.0 | 0.0 |
| JAGELDOB_11 | 0.0 | 1.0 | 0.0 |
| JAGELDOB_12 | 0.0 | 1.0 | 0.0 |
| JAGELDOB_13 | 0.0 | 1.0 | 0.0 |
| JAGELDOB_14 | 0.0 | 1.0 | 0.0 |
| JAGELDOB_15 | 0.0 | 1.0 | 0.0 |
| JAGELDOB_16 | 0.0 | 1.0 | 0.0 |
| JAGELDOB_17 | 0.0 | 1.0 | 0.0 |
| JAGELDOB_18 | 0.0 | 1.0 | 0.0 |
| JAGELDOB_19 | 0.0 | 1.0 | 0.0 |
| JAGELDOB_20 | 0.0 | 1.0 | 0.0 |
| JAGELDOB_21 | 0.0 | 1.0 | 0.0 |
| JAGELDOB_22 | 0.0 | 1.0 | 0.0 |
| JAGELDOB_23 | 1.0 | 0.0 | 1.0 |
| JAGELDOB_24 | 0.0 | 1.0 | 0.0 |
| JAGELDOB_25 | 0.0 | 1.0 | 0.0 |
| JAGELDOB_26 | 0.0 | 1.0 | 0.0 |
| JAGELDOB_27 | 0.0 | 1.0 | 0.0 |
| JAGELDOB_28 | 0.0 | 1.0 | 0.0 |
| JAGELDOB_29 | 0.0 | 1.0 | 0.0 |
| JAGELDOB_30 | 0.0 | 1.0 | 0.0 |
| JAGELDOB_31 | 0.0 | 1.0 | 0.0 |
| JAGELDOB_32 | 1.0 | 0.0 | 1.0 |
| JAGELDOB_33 | 0.0 | 1.0 | 0.0 |
| JAGELDOB_34 | 0.0 | 1.0 | 0.0 |
| JAGELDOB_35 | 0.0 | 1.0 | 0.0 |
| JAGELDOB_36 | 0.0 | 1.0 | 0.0 |
| JAGELDOB_37 | 0.0 | 1.0 | 0.0 |
| JAGELDOB_38 | 0.0 | 1.0 | 0.0 |
| JAGELDOB_39 | 0.0 | 1.0 | 0.0 |
| JAGELDOB_40 | 1.0 | 0.0 | 1.0 |
| JAGELDOB_41 | 0.0 | 1.0 | 0.0 |
| JAGELDOB_42 | 0.0 | 1.0 | 0.0 |
| JAGELDOB_43 | 0.0 | 1.0 | 0.0 |
| JAGELDOB_44 | 1.0 | 0.0 | 1.0 |
| JAGELDOB_45 | 1.0 | 0.0 | 1.0 |
| JAGELDOB_46 | 0.0 | 1.0 | 0.0 |
| JAGELDOB_47 | 0.0 | 1.0 | 0.0 |
| JAGELDOB_48 | 0.0 | 1.0 | 0.0 |
| JAGELDOB_49 | 1.0 | 0.0 | 1.0 |
| JAGELDOB_50 | 0.0 | 1.0 | 0.0 |
| JAGELDOB_51 | 0.0 | 1.0 | 0.0 |
| JAGELDOB_52 | 0.0 | 1.0 | 0.0 |
| JAGELDOB_53 | 0.0 | 1.0 | 0.0 |
| JAGELDOB_54 | 0.0 | 1.0 | 0.0 |
| JAGELDOB_55 | 1.0 | 0.0 | 1.0 |
| JAGELDOB_56 | 0.0 | 1.0 | 0.0 |
| JAGELDOB_57 | 0.0 | 1.0 | 0.0 |
| JAGELDOB_58 | 0.0 | 1.0 | 0.0 |
| JAGELDOB_59 | 1.0 | 0.0 | 1.0 |
| JAGELDOB_60 | 1.0 | 0.0 | 1.0 |
| JAGELDOB_61 | 0.0 | 1.0 | 0.0 |
| JAGELDOB_62 | 0.0 | 1.0 | 0.0 |
| JAGELDOB_63 | 0.0 | 1.0 | 0.0 |
| JAGELDOB_64 | 1.0 | 0.0 | 1.0 |
| JAGELDOB_65 | 1.0 | 0.0 | 1.0 |
| JAGELDOB_66 | 0.0 | 1.0 | 0.0 |
| JAGELDOB_67 | 1.0 | 0.0 | 1.0 |
| JAGELDOB_68 | 0.0 | 1.0 | 0.0 |
| JAGELDOB_69 | 1.0 | 0.0 | 1.0 |
| JAGELDOB_70 | 0.0 | 1.0 | 0.0 |
| JAGELDOB_71 | 1.0 | 0.0 | 1.0 |
| JAGELDOB_72 | 1.0 | 0.0 | 1.0 |
| JAGELDOB_73 | 0.0 | 1.0 | 0.0 |
| JAGELDOB_74 | 1.0 | 0.0 | 1.0 |
| JAGELDOB_75 | 0.0 | 1.0 | 0.0 |
| JAGELDOB_76 | 1.0 | 0.0 | 1.0 |
| JAGELDOB_77 | 0.0 | 1.0 | 0.0 |
| JAGELDOB_78 | 0.0 | 1.0 | 0.0 |
| JAGELDOB_79 | 0.0 | 1.0 | 0.0 |
| JAGELDOB_80 | 0.0 | 1.0 | 0.0 |
| JAGELDOB_81 | 0.0 | 1.0 | 0.0 |
| JAGELDOB_82 | 1.0 | 0.0 | 1.0 |
| JAGELDOB_84 | 0.0 | 1.0 | 0.0 |
| JAGELDOB_85 | 1.0 | 0.0 | 1.0 |
| JAGELDOB_86 | 0.0 | 1.0 | 0.0 |
| JAGELDOB_87 | 1.0 | 0.0 | 1.0 |
| JAGELDOB_88 | 0.0 | 1.0 | 0.0 |
| JAGELDOB_89 | 1.0 | 0.0 | 1.0 |
| JAGELDOB_90 | 1.0 | 0.0 | 1.0 |
| JAGELDOB_92 | 0.0 | 1.0 | 0.0 |
| JAGELDOB_93 | 0.0 | 1.0 | 0.0 |
| JAGELDOB_94 | 1.0 | 0.0 | 1.0 |
| JAGELDOB_95 | 1.0 | 0.0 | 1.0 |
| JAGELDOB_96 | 1.0 | 0.0 | 1.0 |
| JAGELDOB_97 | 0.0 | 1.0 | 0.0 |
| JAGELDOB_98 | 1.0 | 0.0 | 1.0 |
| JAGELDOB_99 | 0.0 | 1.0 | 0.0 |
| JAGELDOB_100 | 0.0 | 1.0 | 0.0 |
| JAGELDOB_101 | 0.0 | 1.0 | 0.0 |
| JAGELDOB_102 | 0.0 | 1.0 | 0.0 |
| JAGELDOB_103 | 1.0 | 0.0 | 1.0 |
| JAGELDOB_104 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| JAGELDOB_1 | 65532 | 107834 | False | Siphoviridae | VOG0703, VOG1637, VOG4856, VOG4856, VOG3463, VOG3462, VOG0801, VOG6163, VOG0209, VOG4586, VOG0207, VOG0205, VOG0204, VOG4568, VOG4556, VOG1886, VOG4581, VOG4841, VOG4571, VOG0198, VOG6214, VOG3307, VOG0536, VOG0189, VOG8647, VOG0226, VOG0514, VOG0906, VOG9708, VOG2228, VOG4552, VOG6495, VOG9667, VOG4602, VOG4662, VOG0275, VOG5378, VOG3325, VOG4156, VOG5353 |
| JAGELDOB_1 | 137368 | 170477 | False | Siphoviridae | VOG8294, VOG0641, VOG7908, VOG2315, VOG5008, VOG6163, VOG4633, VOG4545, VOG0800, VOG0725, VOG0799, VOG0724, VOG5660, VOG0723, VOG4713, VOG1319, VOG4555, VOG7533, VOG4564, VOG0720, VOG10227, VOG0796, VOG0198, VOG3307, VOG1183, VOG10251, VOG0686, VOG0327, VOG4609, VOG4632, VOG6545, VOG0322, VOG4548, VOG8222, VOG0321, VOG2228 |
Phigaro v2.4.0 (Database: Jan. 2024 release)