Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| DKJJHOIF_7 | 41767 | 41961 | CspA | 9.71e-29 | cold shock protein | 84.61 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| DKJJHOIF_1 | 1.0 | 0.0 | 1.0 |
| DKJJHOIF_2 | 0.0 | 1.0 | 0.0 |
| DKJJHOIF_3 | 0.0 | 1.0 | 0.0 |
| DKJJHOIF_4 | 0.0 | 1.0 | 0.0 |
| DKJJHOIF_5 | 0.0 | 1.0 | 0.0 |
| DKJJHOIF_6 | 0.0 | 1.0 | 0.0 |
| DKJJHOIF_7 | 0.0 | 1.0 | 0.0 |
| DKJJHOIF_8 | 0.0 | 1.0 | 0.0 |
| DKJJHOIF_9 | 0.0 | 1.0 | 0.0 |
| DKJJHOIF_10 | 0.0 | 1.0 | 0.0 |
| DKJJHOIF_11 | 0.0 | 1.0 | 0.0 |
| DKJJHOIF_12 | 0.0 | 1.0 | 0.0 |
| DKJJHOIF_13 | 0.0 | 1.0 | 0.0 |
| DKJJHOIF_14 | 0.0 | 1.0 | 0.0 |
| DKJJHOIF_15 | 0.0 | 1.0 | 0.0 |
| DKJJHOIF_16 | 0.0 | 1.0 | 0.0 |
| DKJJHOIF_17 | 0.0 | 1.0 | 0.0 |
| DKJJHOIF_18 | 0.0 | 1.0 | 0.0 |
| DKJJHOIF_19 | 0.0 | 1.0 | 0.0 |
| DKJJHOIF_20 | 0.0 | 1.0 | 0.0 |
| DKJJHOIF_21 | 0.0 | 1.0 | 0.0 |
| DKJJHOIF_22 | 0.0 | 1.0 | 0.0 |
| DKJJHOIF_23 | 0.0 | 1.0 | 0.0 |
| DKJJHOIF_24 | 0.0 | 1.0 | 0.0 |
| DKJJHOIF_25 | 0.0 | 1.0 | 0.0 |
| DKJJHOIF_26 | 0.0 | 1.0 | 0.0 |
| DKJJHOIF_27 | 0.0 | 1.0 | 0.0 |
| DKJJHOIF_28 | 0.0 | 1.0 | 0.0 |
| DKJJHOIF_29 | 0.0 | 1.0 | 0.0 |
| DKJJHOIF_30 | 0.0 | 1.0 | 0.0 |
| DKJJHOIF_31 | 0.0 | 1.0 | 0.0 |
| DKJJHOIF_32 | 0.0 | 1.0 | 0.0 |
| DKJJHOIF_33 | 0.0 | 1.0 | 0.0 |
| DKJJHOIF_34 | 0.0 | 1.0 | 0.0 |
| DKJJHOIF_35 | 0.0 | 1.0 | 0.0 |
| DKJJHOIF_36 | 0.0 | 1.0 | 0.0 |
| DKJJHOIF_37 | 0.0 | 1.0 | 0.0 |
| DKJJHOIF_38 | 0.0 | 1.0 | 0.0 |
| DKJJHOIF_39 | 0.0 | 1.0 | 0.0 |
| DKJJHOIF_40 | 0.0 | 1.0 | 0.0 |
| DKJJHOIF_41 | 0.0 | 1.0 | 0.0 |
| DKJJHOIF_42 | 0.0 | 1.0 | 0.0 |
| DKJJHOIF_43 | 0.0 | 1.0 | 0.0 |
| DKJJHOIF_44 | 0.0 | 1.0 | 0.0 |
| DKJJHOIF_45 | 0.0 | 1.0 | 0.0 |
| DKJJHOIF_46 | 0.0 | 1.0 | 0.0 |
| DKJJHOIF_47 | 0.0 | 1.0 | 0.0 |
| DKJJHOIF_48 | 0.0 | 1.0 | 0.0 |
| DKJJHOIF_49 | 0.0 | 1.0 | 0.0 |
| DKJJHOIF_50 | 0.0 | 1.0 | 0.0 |
| DKJJHOIF_51 | 0.0 | 1.0 | 0.0 |
| DKJJHOIF_52 | 0.0 | 1.0 | 0.0 |
| DKJJHOIF_53 | 0.0 | 1.0 | 0.0 |
| DKJJHOIF_54 | 1.0 | 0.0 | 1.0 |
| DKJJHOIF_55 | 0.0 | 1.0 | 0.0 |
| DKJJHOIF_56 | 0.0 | 1.0 | 0.0 |
| DKJJHOIF_57 | 1.0 | 0.0 | 1.0 |
| DKJJHOIF_58 | 0.0 | 1.0 | 0.0 |
| DKJJHOIF_59 | 1.0 | 0.0 | 1.0 |
| DKJJHOIF_60 | 0.0 | 1.0 | 0.0 |
| DKJJHOIF_61 | 0.0 | 1.0 | 0.0 |
| DKJJHOIF_62 | 1.0 | 0.0 | 1.0 |
| DKJJHOIF_63 | 0.0 | 1.0 | 0.0 |
| DKJJHOIF_65 | 1.0 | 0.0 | 1.0 |
| DKJJHOIF_66 | 0.0 | 1.0 | 0.0 |
| DKJJHOIF_67 | 0.0 | 1.0 | 0.0 |
| DKJJHOIF_68 | 1.0 | 0.0 | 1.0 |
| DKJJHOIF_70 | 0.0 | 1.0 | 0.0 |
| DKJJHOIF_71 | 1.0 | 0.0 | 1.0 |
| DKJJHOIF_72 | 1.0 | 0.0 | 1.0 |
| DKJJHOIF_73 | 0.0 | 1.0 | 0.0 |
| DKJJHOIF_74 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| DKJJHOIF_1 | 43039 | 62709 | False | Unknown | VOG0054, VOG0753, VOG0648, VOG9226, VOG10609, VOG6540, VOG5534, VOG7628, VOG7629, VOG6036, VOG6941, VOG6246, VOG6524, VOG6031, VOG5721, VOG6488 |
| DKJJHOIF_12 | 13433 | 44402 | True | Myoviridae / Siphoviridae | VOG4571, VOG0443, VOG4548, VOG0221, VOG0221, VOG9409, VOG9502, VOG0641, VOG4589, VOG0204, VOG4553, VOG4573, VOG4556, VOG1886, VOG1448, VOG4571, VOG4581, VOG0198, VOG4548, VOG0327, VOG4606, VOG4606, VOG0026, VOG0021, VOG1047, VOG7438, VOG0052 |
Phigaro v2.4.0 (Database: Jan. 2024 release)