Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 0 | 1 | 3.16 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| HBCGBFBE_62 | 7590 | 8258 | ErmB | ARO:3000375 | ErmB | 97.29 | 89.52 | AF242872.1 |
| HBCGBFBE_53 | 6348 | 8267 | tet(W) | ARO:3000194 | tet(W) | 92.63 | 100.00 | AJ222769.3 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| HBCGBFBE_53 | 8446 | 9822 | tet(L) | Doxycycline, Tetracycline, Doxycycline, Tetracycline, Minocycline, Tigecycline | 99.49 | 100.00 | AY081910 |
| HBCGBFBE_62 | 7602 | 8259 | erm(B) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.39 | 87.38 | U48430 |
| HBCGBFBE_53 | 6348 | 8252 | tet(O/W/O)-2 | Doxycycline, Tetracycline, Minocycline | 89.26 | 99.01 | AY196920 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| HBCGBFBE_53 | 8446 | 9819 | tet(L) | tetracycline efflux MFS transporter Tet(L) | BLASTX | 98.69 | 100.00 | WP_002294500.1 |
| HBCGBFBE_62 | 7596 | 8258 | erm(B) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B) | PARTIAL_CONTIG_ENDX | 98.64 | 89.11 | WP_063844850.1 |
| HBCGBFBE_53 | 6348 | 8261 | tet(W) | tetracycline resistance ribosomal protection protein Tet(W) | BLASTX | 94.67 | 99.84 | WP_003672618.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| HBCGBFBE_10 | 20275 | 20469 | CspA | 6.60e-29 | cold shock protein | 84.61 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| HBCGBFBE_1 | 0.0 | 1.0 | 0.0 |
| HBCGBFBE_2 | 0.0 | 1.0 | 0.0 |
| HBCGBFBE_3 | 0.0 | 1.0 | 0.0 |
| HBCGBFBE_4 | 0.0 | 1.0 | 0.0 |
| HBCGBFBE_5 | 0.0 | 1.0 | 0.0 |
| HBCGBFBE_6 | 0.0 | 1.0 | 0.0 |
| HBCGBFBE_7 | 0.0 | 1.0 | 0.0 |
| HBCGBFBE_8 | 0.0 | 1.0 | 0.0 |
| HBCGBFBE_9 | 0.0 | 1.0 | 0.0 |
| HBCGBFBE_10 | 0.0 | 1.0 | 0.0 |
| HBCGBFBE_11 | 0.0 | 1.0 | 0.0 |
| HBCGBFBE_12 | 0.0 | 1.0 | 0.0 |
| HBCGBFBE_13 | 0.0 | 1.0 | 0.0 |
| HBCGBFBE_14 | 0.0 | 1.0 | 0.0 |
| HBCGBFBE_15 | 0.0 | 1.0 | 0.0 |
| HBCGBFBE_16 | 0.0 | 1.0 | 0.0 |
| HBCGBFBE_17 | 0.0 | 1.0 | 0.0 |
| HBCGBFBE_18 | 0.0 | 1.0 | 0.0 |
| HBCGBFBE_19 | 0.0 | 1.0 | 0.0 |
| HBCGBFBE_20 | 0.0 | 1.0 | 0.0 |
| HBCGBFBE_21 | 0.0 | 1.0 | 0.0 |
| HBCGBFBE_22 | 0.0 | 1.0 | 0.0 |
| HBCGBFBE_23 | 0.0 | 1.0 | 0.0 |
| HBCGBFBE_24 | 0.0 | 1.0 | 0.0 |
| HBCGBFBE_25 | 0.0 | 1.0 | 0.0 |
| HBCGBFBE_26 | 0.0 | 1.0 | 0.0 |
| HBCGBFBE_27 | 0.0 | 1.0 | 0.0 |
| HBCGBFBE_28 | 0.0 | 1.0 | 0.0 |
| HBCGBFBE_29 | 0.0 | 1.0 | 0.0 |
| HBCGBFBE_30 | 0.0 | 1.0 | 0.0 |
| HBCGBFBE_31 | 0.0 | 1.0 | 0.0 |
| HBCGBFBE_32 | 0.0 | 1.0 | 0.0 |
| HBCGBFBE_33 | 0.0 | 1.0 | 0.0 |
| HBCGBFBE_34 | 0.0 | 1.0 | 0.0 |
| HBCGBFBE_35 | 0.0 | 1.0 | 0.0 |
| HBCGBFBE_36 | 1.0 | 0.0 | 1.0 |
| HBCGBFBE_37 | 0.0 | 1.0 | 0.0 |
| HBCGBFBE_38 | 0.0 | 1.0 | 0.0 |
| HBCGBFBE_39 | 0.0 | 1.0 | 0.0 |
| HBCGBFBE_40 | 1.0 | 0.0 | 1.0 |
| HBCGBFBE_41 | 1.0 | 0.0 | 1.0 |
| HBCGBFBE_42 | 0.0 | 1.0 | 0.0 |
| HBCGBFBE_43 | 0.0 | 1.0 | 0.0 |
| HBCGBFBE_44 | 1.0 | 0.0 | 1.0 |
| HBCGBFBE_45 | 0.0 | 1.0 | 0.0 |
| HBCGBFBE_46 | 0.0 | 1.0 | 0.0 |
| HBCGBFBE_47 | 0.0 | 1.0 | 0.0 |
| HBCGBFBE_48 | 0.0 | 1.0 | 0.0 |
| HBCGBFBE_49 | 1.0 | 0.0 | 1.0 |
| HBCGBFBE_50 | 0.0 | 1.0 | 0.0 |
| HBCGBFBE_51 | 0.0 | 1.0 | 0.0 |
| HBCGBFBE_52 | 0.0 | 1.0 | 0.0 |
| HBCGBFBE_53 | 1.0 | 0.0 | 1.0 |
| HBCGBFBE_54 | 0.0 | 1.0 | 0.0 |
| HBCGBFBE_55 | 0.0 | 1.0 | 0.0 |
| HBCGBFBE_56 | 0.0 | 1.0 | 0.0 |
| HBCGBFBE_57 | 0.0 | 1.0 | 0.0 |
| HBCGBFBE_58 | 0.0 | 1.0 | 0.0 |
| HBCGBFBE_59 | 0.0 | 1.0 | 0.0 |
| HBCGBFBE_60 | 0.0 | 1.0 | 0.0 |
| HBCGBFBE_61 | 1.0 | 0.0 | 1.0 |
| HBCGBFBE_62 | 1.0 | 0.0 | 1.0 |
| HBCGBFBE_63 | 0.0 | 1.0 | 0.0 |
| HBCGBFBE_64 | 1.0 | 0.0 | 1.0 |
| HBCGBFBE_65 | 0.0 | 1.0 | 0.0 |
| HBCGBFBE_66 | 0.0 | 1.0 | 0.0 |
| HBCGBFBE_67 | 1.0 | 0.0 | 1.0 |
| HBCGBFBE_68 | 1.0 | 0.0 | 1.0 |
| HBCGBFBE_69 | 0.0 | 1.0 | 0.0 |
| HBCGBFBE_70 | 0.0 | 1.0 | 0.0 |
| HBCGBFBE_72 | 0.0 | 1.0 | 0.0 |
| HBCGBFBE_73 | 0.0 | 1.0 | 0.0 |
| HBCGBFBE_74 | 0.0 | 1.0 | 0.0 |
| HBCGBFBE_75 | 0.0 | 1.0 | 0.0 |
| HBCGBFBE_76 | 1.0 | 0.0 | 1.0 |
| HBCGBFBE_77 | 0.0 | 1.0 | 0.0 |
| HBCGBFBE_78 | 1.0 | 0.0 | 1.0 |
| HBCGBFBE_79 | 0.0 | 1.0 | 0.0 |
| HBCGBFBE_80 | 1.0 | 0.0 | 1.0 |
| HBCGBFBE_81 | 0.0 | 1.0 | 0.0 |
| HBCGBFBE_82 | 0.0 | 1.0 | 0.0 |
| HBCGBFBE_83 | 0.0 | 1.0 | 0.0 |
| HBCGBFBE_84 | 1.0 | 0.0 | 1.0 |
| HBCGBFBE_86 | 1.0 | 0.0 | 1.0 |
| HBCGBFBE_87 | 0.0 | 1.0 | 0.0 |
| HBCGBFBE_88 | 1.0 | 0.0 | 1.0 |
| HBCGBFBE_89 | 1.0 | 0.0 | 1.0 |
| HBCGBFBE_90 | 0.0 | 1.0 | 0.0 |
| HBCGBFBE_91 | 1.0 | 0.0 | 1.0 |
| HBCGBFBE_93 | 0.0 | 1.0 | 0.0 |
| HBCGBFBE_94 | 0.0 | 1.0 | 0.0 |
| HBCGBFBE_95 | 0.0 | 1.0 | 0.0 |
| HBCGBFBE_96 | 1.0 | 0.0 | 1.0 |
| HBCGBFBE_97 | 0.0 | 1.0 | 0.0 |
| HBCGBFBE_98 | 1.0 | 0.0 | 1.0 |
| HBCGBFBE_99 | 1.0 | 0.0 | 1.0 |
| HBCGBFBE_100 | 0.0 | 1.0 | 0.0 |
| HBCGBFBE_101 | 1.0 | 0.0 | 1.0 |
| HBCGBFBE_102 | 0.0 | 1.0 | 0.0 |
| HBCGBFBE_103 | 1.0 | 0.0 | 1.0 |
| HBCGBFBE_104 | 0.0 | 1.0 | 0.0 |
| HBCGBFBE_105 | 1.0 | 0.0 | 1.0 |
| HBCGBFBE_106 | 1.0 | 0.0 | 1.0 |
| HBCGBFBE_108 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| No hit found | |||||
Phigaro v2.4.0 (Database: Jan. 2024 release)