Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 1 | 2.24 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| ADCGFEAG_53 | 6329 | 8248 | tet(W) | ARO:3000194 | tet(W) | 92.63 | 100.00 | AJ222769.3 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| ADCGFEAG_53 | 8427 | 9803 | tet(L) | Doxycycline, Tetracycline, Minocycline, Tigecycline, Doxycycline, Tetracycline | 99.49 | 100.00 | AY081910 |
| ADCGFEAG_53 | 6329 | 8233 | tet(O/W/O)-2 | Doxycycline, Tetracycline, Minocycline | 89.26 | 99.01 | AY196920 |
| ADCGFEAG_119 | 34 | 515 | erm(T) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.59 | 65.31 | AJ488494 |
| ADCGFEAG_120 | 9 | 515 | erm(B) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 98.82 | 66.40 | X66468 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| ADCGFEAG_53 | 8427 | 9800 | tet(L) | tetracycline efflux MFS transporter Tet(L) | BLASTX | 98.69 | 100.00 | WP_002294500.1 |
| ADCGFEAG_53 | 6329 | 8242 | tet(W) | tetracycline resistance ribosomal protection protein Tet(W) | BLASTX | 94.67 | 99.84 | WP_003672618.1 |
| ADCGFEAG_120 | 34 | 513 | erm(B) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B) | PARTIAL_CONTIG_ENDX | 100.00 | 65.31 | WP_001038795.1 |
| ADCGFEAG_119 | 34 | 513 | erm(T) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(T) | PARTIAL_CONTIG_ENDX | 98.75 | 65.31 | WP_011100845.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| ADCGFEAG_7 | 41768 | 41962 | CspA | 9.71e-29 | cold shock protein | 84.61 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| ADCGFEAG_31 | 17197 | 18235 | repUS67 | 1041 / 1039 | 97.21 | CP006012 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| ADCGFEAG_1 | 0.0 | 1.0 | 0.0 |
| ADCGFEAG_2 | 0.0 | 1.0 | 0.0 |
| ADCGFEAG_3 | 0.0 | 1.0 | 0.0 |
| ADCGFEAG_4 | 0.0 | 1.0 | 0.0 |
| ADCGFEAG_5 | 0.0 | 1.0 | 0.0 |
| ADCGFEAG_6 | 0.0 | 1.0 | 0.0 |
| ADCGFEAG_7 | 0.0 | 1.0 | 0.0 |
| ADCGFEAG_8 | 0.0 | 1.0 | 0.0 |
| ADCGFEAG_9 | 0.0 | 1.0 | 0.0 |
| ADCGFEAG_10 | 1.0 | 0.0 | 1.0 |
| ADCGFEAG_11 | 0.0 | 1.0 | 0.0 |
| ADCGFEAG_12 | 0.0 | 1.0 | 0.0 |
| ADCGFEAG_13 | 0.0 | 1.0 | 0.0 |
| ADCGFEAG_14 | 0.0 | 1.0 | 0.0 |
| ADCGFEAG_15 | 0.0 | 1.0 | 0.0 |
| ADCGFEAG_16 | 0.0 | 1.0 | 0.0 |
| ADCGFEAG_17 | 0.0 | 1.0 | 0.0 |
| ADCGFEAG_18 | 0.0 | 1.0 | 0.0 |
| ADCGFEAG_19 | 0.0 | 1.0 | 0.0 |
| ADCGFEAG_20 | 0.0 | 1.0 | 0.0 |
| ADCGFEAG_21 | 0.0 | 1.0 | 0.0 |
| ADCGFEAG_22 | 0.0 | 1.0 | 0.0 |
| ADCGFEAG_23 | 0.0 | 1.0 | 0.0 |
| ADCGFEAG_24 | 0.0 | 1.0 | 0.0 |
| ADCGFEAG_25 | 0.0 | 1.0 | 0.0 |
| ADCGFEAG_26 | 0.0 | 1.0 | 0.0 |
| ADCGFEAG_27 | 0.0 | 1.0 | 0.0 |
| ADCGFEAG_28 | 0.0 | 1.0 | 0.0 |
| ADCGFEAG_29 | 0.0 | 1.0 | 0.0 |
| ADCGFEAG_30 | 0.0 | 1.0 | 0.0 |
| ADCGFEAG_31 | 1.0 | 0.0 | 1.0 |
| ADCGFEAG_32 | 0.0 | 1.0 | 0.0 |
| ADCGFEAG_33 | 0.0 | 1.0 | 0.0 |
| ADCGFEAG_34 | 0.0 | 1.0 | 0.0 |
| ADCGFEAG_35 | 0.0 | 1.0 | 0.0 |
| ADCGFEAG_36 | 0.0 | 1.0 | 0.0 |
| ADCGFEAG_37 | 0.0 | 1.0 | 0.0 |
| ADCGFEAG_38 | 0.0 | 1.0 | 0.0 |
| ADCGFEAG_39 | 0.0 | 1.0 | 0.0 |
| ADCGFEAG_40 | 1.0 | 0.0 | 1.0 |
| ADCGFEAG_41 | 1.0 | 0.0 | 1.0 |
| ADCGFEAG_42 | 0.0 | 1.0 | 0.0 |
| ADCGFEAG_43 | 0.0 | 1.0 | 0.0 |
| ADCGFEAG_44 | 1.0 | 0.0 | 1.0 |
| ADCGFEAG_45 | 0.0 | 1.0 | 0.0 |
| ADCGFEAG_46 | 0.0 | 1.0 | 0.0 |
| ADCGFEAG_47 | 0.0 | 1.0 | 0.0 |
| ADCGFEAG_48 | 0.0 | 1.0 | 0.0 |
| ADCGFEAG_49 | 0.0 | 1.0 | 0.0 |
| ADCGFEAG_50 | 0.0 | 1.0 | 0.0 |
| ADCGFEAG_51 | 0.0 | 1.0 | 0.0 |
| ADCGFEAG_52 | 0.0 | 1.0 | 0.0 |
| ADCGFEAG_53 | 1.0 | 0.0 | 1.0 |
| ADCGFEAG_54 | 0.0 | 1.0 | 0.0 |
| ADCGFEAG_55 | 0.0 | 1.0 | 0.0 |
| ADCGFEAG_56 | 0.0 | 1.0 | 0.0 |
| ADCGFEAG_57 | 0.0 | 1.0 | 0.0 |
| ADCGFEAG_58 | 0.0 | 1.0 | 0.0 |
| ADCGFEAG_59 | 1.0 | 0.0 | 1.0 |
| ADCGFEAG_60 | 1.0 | 0.0 | 1.0 |
| ADCGFEAG_61 | 1.0 | 0.0 | 1.0 |
| ADCGFEAG_62 | 0.0 | 1.0 | 0.0 |
| ADCGFEAG_63 | 1.0 | 0.0 | 1.0 |
| ADCGFEAG_64 | 0.0 | 1.0 | 0.0 |
| ADCGFEAG_65 | 0.0 | 1.0 | 0.0 |
| ADCGFEAG_66 | 1.0 | 0.0 | 1.0 |
| ADCGFEAG_67 | 1.0 | 0.0 | 1.0 |
| ADCGFEAG_68 | 0.0 | 1.0 | 0.0 |
| ADCGFEAG_69 | 1.0 | 0.0 | 1.0 |
| ADCGFEAG_70 | 0.0 | 1.0 | 0.0 |
| ADCGFEAG_71 | 1.0 | 0.0 | 1.0 |
| ADCGFEAG_72 | 1.0 | 0.0 | 1.0 |
| ADCGFEAG_73 | 0.0 | 1.0 | 0.0 |
| ADCGFEAG_74 | 0.0 | 1.0 | 0.0 |
| ADCGFEAG_75 | 0.0 | 1.0 | 0.0 |
| ADCGFEAG_76 | 0.0 | 1.0 | 0.0 |
| ADCGFEAG_77 | 1.0 | 0.0 | 1.0 |
| ADCGFEAG_78 | 0.0 | 1.0 | 0.0 |
| ADCGFEAG_79 | 0.0 | 1.0 | 0.0 |
| ADCGFEAG_80 | 0.0 | 1.0 | 0.0 |
| ADCGFEAG_81 | 0.0 | 1.0 | 0.0 |
| ADCGFEAG_82 | 1.0 | 0.0 | 1.0 |
| ADCGFEAG_83 | 0.0 | 1.0 | 0.0 |
| ADCGFEAG_85 | 1.0 | 0.0 | 1.0 |
| ADCGFEAG_86 | 0.0 | 1.0 | 0.0 |
| ADCGFEAG_87 | 0.0 | 1.0 | 0.0 |
| ADCGFEAG_88 | 1.0 | 0.0 | 1.0 |
| ADCGFEAG_89 | 0.0 | 1.0 | 0.0 |
| ADCGFEAG_91 | 0.0 | 1.0 | 0.0 |
| ADCGFEAG_92 | 1.0 | 0.0 | 1.0 |
| ADCGFEAG_93 | 1.0 | 0.0 | 1.0 |
| ADCGFEAG_94 | 1.0 | 0.0 | 1.0 |
| ADCGFEAG_95 | 1.0 | 0.0 | 1.0 |
| ADCGFEAG_96 | 0.0 | 1.0 | 0.0 |
| ADCGFEAG_97 | 1.0 | 0.0 | 1.0 |
| ADCGFEAG_98 | 0.0 | 1.0 | 0.0 |
| ADCGFEAG_99 | 1.0 | 0.0 | 1.0 |
| ADCGFEAG_100 | 1.0 | 0.0 | 1.0 |
| ADCGFEAG_102 | 0.0 | 1.0 | 0.0 |
| ADCGFEAG_103 | 1.0 | 0.0 | 1.0 |
| ADCGFEAG_104 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| ADCGFEAG_10 | 8977 | 39562 | False | Siphoviridae | VOG0703, VOG0641, VOG5008, VOG4910, VOG4633, VOG4545, VOG0800, VOG0725, VOG0799, VOG0724, VOG5660, VOG0723, VOG4713, VOG1319, VOG4555, VOG7533, VOG4564, VOG0720, VOG10227, VOG0796, VOG0198, VOG3307, VOG0051, VOG3307, VOG0327, VOG6165, VOG5278, VOG4609, VOG4632, VOG6545, VOG0322, VOG4548, VOG0321, VOG8057 |
Phigaro v2.4.0 (Database: Jan. 2024 release)