Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| NHNDFJLI_9 | 24275 | 24469 | CspA | 7.15e-29 | cold shock protein | 84.61 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| NHNDFJLI_1 | 0.0 | 1.0 | 0.0 |
| NHNDFJLI_2 | 0.0 | 1.0 | 0.0 |
| NHNDFJLI_3 | 0.0 | 1.0 | 0.0 |
| NHNDFJLI_4 | 0.0 | 1.0 | 0.0 |
| NHNDFJLI_5 | 0.0 | 1.0 | 0.0 |
| NHNDFJLI_6 | 0.0 | 1.0 | 0.0 |
| NHNDFJLI_7 | 0.0 | 1.0 | 0.0 |
| NHNDFJLI_8 | 0.0 | 1.0 | 0.0 |
| NHNDFJLI_9 | 0.0 | 1.0 | 0.0 |
| NHNDFJLI_10 | 0.0 | 1.0 | 0.0 |
| NHNDFJLI_11 | 0.0 | 1.0 | 0.0 |
| NHNDFJLI_12 | 0.0 | 1.0 | 0.0 |
| NHNDFJLI_13 | 0.0 | 1.0 | 0.0 |
| NHNDFJLI_14 | 0.0 | 1.0 | 0.0 |
| NHNDFJLI_15 | 0.0 | 1.0 | 0.0 |
| NHNDFJLI_16 | 0.0 | 1.0 | 0.0 |
| NHNDFJLI_17 | 0.0 | 1.0 | 0.0 |
| NHNDFJLI_18 | 0.0 | 1.0 | 0.0 |
| NHNDFJLI_19 | 0.0 | 1.0 | 0.0 |
| NHNDFJLI_20 | 0.0 | 1.0 | 0.0 |
| NHNDFJLI_21 | 0.0 | 1.0 | 0.0 |
| NHNDFJLI_22 | 0.0 | 1.0 | 0.0 |
| NHNDFJLI_23 | 0.0 | 1.0 | 0.0 |
| NHNDFJLI_24 | 0.0 | 1.0 | 0.0 |
| NHNDFJLI_25 | 0.0 | 1.0 | 0.0 |
| NHNDFJLI_26 | 0.0 | 1.0 | 0.0 |
| NHNDFJLI_27 | 0.0 | 1.0 | 0.0 |
| NHNDFJLI_28 | 0.0 | 1.0 | 0.0 |
| NHNDFJLI_29 | 0.0 | 1.0 | 0.0 |
| NHNDFJLI_30 | 0.0 | 1.0 | 0.0 |
| NHNDFJLI_31 | 0.0 | 1.0 | 0.0 |
| NHNDFJLI_32 | 0.0 | 1.0 | 0.0 |
| NHNDFJLI_33 | 0.0 | 1.0 | 0.0 |
| NHNDFJLI_34 | 1.0 | 0.0 | 1.0 |
| NHNDFJLI_35 | 0.0 | 1.0 | 0.0 |
| NHNDFJLI_36 | 0.0 | 1.0 | 0.0 |
| NHNDFJLI_37 | 0.0 | 1.0 | 0.0 |
| NHNDFJLI_38 | 0.0 | 1.0 | 0.0 |
| NHNDFJLI_39 | 0.0 | 1.0 | 0.0 |
| NHNDFJLI_40 | 0.0 | 1.0 | 0.0 |
| NHNDFJLI_41 | 0.0 | 1.0 | 0.0 |
| NHNDFJLI_42 | 1.0 | 0.0 | 1.0 |
| NHNDFJLI_43 | 0.0 | 1.0 | 0.0 |
| NHNDFJLI_44 | 0.0 | 1.0 | 0.0 |
| NHNDFJLI_45 | 0.0 | 1.0 | 0.0 |
| NHNDFJLI_46 | 0.0 | 1.0 | 0.0 |
| NHNDFJLI_47 | 0.0 | 1.0 | 0.0 |
| NHNDFJLI_48 | 0.0 | 1.0 | 0.0 |
| NHNDFJLI_49 | 0.0 | 1.0 | 0.0 |
| NHNDFJLI_50 | 0.0 | 1.0 | 0.0 |
| NHNDFJLI_51 | 1.0 | 0.0 | 1.0 |
| NHNDFJLI_52 | 0.0 | 1.0 | 0.0 |
| NHNDFJLI_53 | 0.0 | 1.0 | 0.0 |
| NHNDFJLI_54 | 0.0 | 1.0 | 0.0 |
| NHNDFJLI_55 | 0.0 | 1.0 | 0.0 |
| NHNDFJLI_56 | 0.0 | 1.0 | 0.0 |
| NHNDFJLI_57 | 0.0 | 1.0 | 0.0 |
| NHNDFJLI_58 | 1.0 | 0.0 | 1.0 |
| NHNDFJLI_59 | 1.0 | 0.0 | 1.0 |
| NHNDFJLI_60 | 0.0 | 1.0 | 0.0 |
| NHNDFJLI_61 | 1.0 | 0.0 | 1.0 |
| NHNDFJLI_62 | 0.0 | 1.0 | 0.0 |
| NHNDFJLI_63 | 1.0 | 0.0 | 1.0 |
| NHNDFJLI_64 | 1.0 | 0.0 | 1.0 |
| NHNDFJLI_65 | 1.0 | 0.0 | 1.0 |
| NHNDFJLI_66 | 1.0 | 0.0 | 1.0 |
| NHNDFJLI_67 | 0.0 | 1.0 | 0.0 |
| NHNDFJLI_68 | 0.0 | 1.0 | 0.0 |
| NHNDFJLI_69 | 1.0 | 0.0 | 1.0 |
| NHNDFJLI_70 | 0.0 | 1.0 | 0.0 |
| NHNDFJLI_71 | 0.0 | 1.0 | 0.0 |
| NHNDFJLI_72 | 0.0 | 1.0 | 0.0 |
| NHNDFJLI_73 | 0.0 | 1.0 | 0.0 |
| NHNDFJLI_74 | 0.0 | 1.0 | 0.0 |
| NHNDFJLI_75 | 0.0 | 1.0 | 0.0 |
| NHNDFJLI_77 | 1.0 | 0.0 | 1.0 |
| NHNDFJLI_78 | 0.0 | 1.0 | 0.0 |
| NHNDFJLI_79 | 0.0 | 1.0 | 0.0 |
| NHNDFJLI_80 | 0.0 | 1.0 | 0.0 |
| NHNDFJLI_81 | 1.0 | 0.0 | 1.0 |
| NHNDFJLI_82 | 1.0 | 0.0 | 1.0 |
| NHNDFJLI_83 | 1.0 | 0.0 | 1.0 |
| NHNDFJLI_85 | 1.0 | 0.0 | 1.0 |
| NHNDFJLI_86 | 0.0 | 1.0 | 0.0 |
| NHNDFJLI_87 | 0.0 | 1.0 | 0.0 |
| NHNDFJLI_88 | 0.0 | 1.0 | 0.0 |
| NHNDFJLI_89 | 0.0 | 1.0 | 0.0 |
| NHNDFJLI_90 | 1.0 | 0.0 | 1.0 |
| NHNDFJLI_91 | 1.0 | 0.0 | 1.0 |
| NHNDFJLI_92 | 0.0 | 1.0 | 0.0 |
| NHNDFJLI_93 | 1.0 | 0.0 | 1.0 |
| NHNDFJLI_94 | 1.0 | 0.0 | 1.0 |
| NHNDFJLI_95 | 1.0 | 0.0 | 1.0 |
| NHNDFJLI_96 | 0.0 | 1.0 | 0.0 |
| NHNDFJLI_97 | 1.0 | 0.0 | 1.0 |
| NHNDFJLI_98 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| NHNDFJLI_1 | 96758 | 123767 | False | Siphoviridae | VOG0198, VOG4570, VOG0776, VOG1345, VOG4841, VOG4581, VOG1886, VOG4556, VOG4568, VOG0204, VOG0205, VOG0207, VOG4586, VOG0209, VOG0660, VOG4545, VOG0801, VOG10972, VOG7388, VOG4856, VOG1637, VOG0054, VOG4865 |
Phigaro v2.4.0 (Database: Jan. 2024 release)