Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 1 | 0 | 1 | 1.41 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| GCKIBPGL_63 | 4148 | 6073 | tet(W) | ARO:3000194 | tet(W) | 96.71 | 100.31 | AJ222769.3 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| GCKIBPGL_63 | 4148 | 6060 | tet(W) | Doxycycline, Tetracycline, Minocycline | 98.85 | 99.64 | FN396364 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| GCKIBPGL_63 | 4148 | 6061 | tet(W) | tetracycline resistance ribosomal protection protein Tet(W) | BLASTX | 99.53 | 99.84 | WP_003672618.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| GCKIBPGL_8 | 41853 | 42047 | CspA | 6.93e-29 | cold shock protein | 84.61 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| GCKIBPGL_23 | 2476 | 3514 | repUS67 | 1039 / 1039 | 96.34 | CP006012 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| GCKIBPGL_1 | 0.0 | 1.0 | 0.0 |
| GCKIBPGL_2 | 0.0 | 1.0 | 0.0 |
| GCKIBPGL_3 | 0.0 | 1.0 | 0.0 |
| GCKIBPGL_4 | 0.0 | 1.0 | 0.0 |
| GCKIBPGL_5 | 0.0 | 1.0 | 0.0 |
| GCKIBPGL_6 | 0.0 | 1.0 | 0.0 |
| GCKIBPGL_7 | 0.0 | 1.0 | 0.0 |
| GCKIBPGL_8 | 0.0 | 1.0 | 0.0 |
| GCKIBPGL_9 | 0.0 | 1.0 | 0.0 |
| GCKIBPGL_10 | 0.0 | 1.0 | 0.0 |
| GCKIBPGL_11 | 0.0 | 1.0 | 0.0 |
| GCKIBPGL_12 | 0.0 | 1.0 | 0.0 |
| GCKIBPGL_13 | 0.0 | 1.0 | 0.0 |
| GCKIBPGL_14 | 0.0 | 1.0 | 0.0 |
| GCKIBPGL_15 | 0.0 | 1.0 | 0.0 |
| GCKIBPGL_16 | 0.0 | 1.0 | 0.0 |
| GCKIBPGL_17 | 0.0 | 1.0 | 0.0 |
| GCKIBPGL_18 | 0.0 | 1.0 | 0.0 |
| GCKIBPGL_19 | 0.0 | 1.0 | 0.0 |
| GCKIBPGL_20 | 0.0 | 1.0 | 0.0 |
| GCKIBPGL_21 | 0.0 | 1.0 | 0.0 |
| GCKIBPGL_22 | 0.0 | 1.0 | 0.0 |
| GCKIBPGL_23 | 1.0 | 0.0 | 1.0 |
| GCKIBPGL_24 | 0.0 | 1.0 | 0.0 |
| GCKIBPGL_25 | 0.0 | 1.0 | 0.0 |
| GCKIBPGL_26 | 0.0 | 1.0 | 0.0 |
| GCKIBPGL_27 | 0.0 | 1.0 | 0.0 |
| GCKIBPGL_28 | 0.0 | 1.0 | 0.0 |
| GCKIBPGL_29 | 0.0 | 1.0 | 0.0 |
| GCKIBPGL_30 | 0.0 | 1.0 | 0.0 |
| GCKIBPGL_31 | 0.0 | 1.0 | 0.0 |
| GCKIBPGL_32 | 0.0 | 1.0 | 0.0 |
| GCKIBPGL_33 | 0.0 | 1.0 | 0.0 |
| GCKIBPGL_34 | 0.0 | 1.0 | 0.0 |
| GCKIBPGL_35 | 0.0 | 1.0 | 0.0 |
| GCKIBPGL_36 | 0.0 | 1.0 | 0.0 |
| GCKIBPGL_37 | 0.0 | 1.0 | 0.0 |
| GCKIBPGL_38 | 0.0 | 1.0 | 0.0 |
| GCKIBPGL_39 | 0.0 | 1.0 | 0.0 |
| GCKIBPGL_40 | 0.0 | 1.0 | 0.0 |
| GCKIBPGL_41 | 0.0 | 1.0 | 0.0 |
| GCKIBPGL_42 | 0.0 | 1.0 | 0.0 |
| GCKIBPGL_43 | 0.0 | 1.0 | 0.0 |
| GCKIBPGL_44 | 0.0 | 1.0 | 0.0 |
| GCKIBPGL_45 | 1.0 | 0.0 | 1.0 |
| GCKIBPGL_46 | 0.0 | 1.0 | 0.0 |
| GCKIBPGL_47 | 0.0 | 1.0 | 0.0 |
| GCKIBPGL_48 | 0.0 | 1.0 | 0.0 |
| GCKIBPGL_49 | 0.0 | 1.0 | 0.0 |
| GCKIBPGL_50 | 0.0 | 1.0 | 0.0 |
| GCKIBPGL_51 | 1.0 | 0.0 | 1.0 |
| GCKIBPGL_52 | 1.0 | 0.0 | 1.0 |
| GCKIBPGL_53 | 0.0 | 1.0 | 0.0 |
| GCKIBPGL_54 | 1.0 | 0.0 | 1.0 |
| GCKIBPGL_55 | 0.0 | 1.0 | 0.0 |
| GCKIBPGL_56 | 0.0 | 1.0 | 0.0 |
| GCKIBPGL_57 | 0.0 | 1.0 | 0.0 |
| GCKIBPGL_58 | 1.0 | 0.0 | 1.0 |
| GCKIBPGL_59 | 1.0 | 0.0 | 1.0 |
| GCKIBPGL_60 | 0.0 | 1.0 | 0.0 |
| GCKIBPGL_61 | 0.0 | 1.0 | 0.0 |
| GCKIBPGL_62 | 1.0 | 0.0 | 1.0 |
| GCKIBPGL_63 | 0.0 | 1.0 | 0.0 |
| GCKIBPGL_64 | 0.0 | 1.0 | 0.0 |
| GCKIBPGL_65 | 0.0 | 1.0 | 0.0 |
| GCKIBPGL_66 | 1.0 | 0.0 | 1.0 |
| GCKIBPGL_67 | 0.0 | 1.0 | 0.0 |
| GCKIBPGL_68 | 1.0 | 0.0 | 1.0 |
| GCKIBPGL_69 | 1.0 | 0.0 | 1.0 |
| GCKIBPGL_70 | 0.0 | 1.0 | 0.0 |
| GCKIBPGL_71 | 1.0 | 0.0 | 1.0 |
| GCKIBPGL_72 | 0.0 | 1.0 | 0.0 |
| GCKIBPGL_73 | 0.0 | 1.0 | 0.0 |
| GCKIBPGL_74 | 1.0 | 0.0 | 1.0 |
| GCKIBPGL_75 | 1.0 | 0.0 | 1.0 |
| GCKIBPGL_76 | 0.0 | 1.0 | 0.0 |
| GCKIBPGL_77 | 0.0 | 1.0 | 0.0 |
| GCKIBPGL_79 | 1.0 | 0.0 | 1.0 |
| GCKIBPGL_80 | 1.0 | 0.0 | 1.0 |
| GCKIBPGL_81 | 1.0 | 0.0 | 1.0 |
| GCKIBPGL_82 | 1.0 | 0.0 | 1.0 |
| GCKIBPGL_83 | 0.0 | 1.0 | 0.0 |
| GCKIBPGL_84 | 0.0 | 1.0 | 0.0 |
| GCKIBPGL_85 | 0.0 | 1.0 | 0.0 |
| GCKIBPGL_86 | 1.0 | 0.0 | 1.0 |
| GCKIBPGL_87 | 0.0 | 1.0 | 0.0 |
| GCKIBPGL_88 | 1.0 | 0.0 | 1.0 |
| GCKIBPGL_89 | 0.0 | 1.0 | 0.0 |
| GCKIBPGL_91 | 0.0 | 1.0 | 0.0 |
| GCKIBPGL_92 | 1.0 | 0.0 | 1.0 |
| GCKIBPGL_93 | 1.0 | 0.0 | 1.0 |
| GCKIBPGL_94 | 0.0 | 1.0 | 0.0 |
| GCKIBPGL_95 | 1.0 | 0.0 | 1.0 |
| GCKIBPGL_96 | 1.0 | 0.0 | 1.0 |
| GCKIBPGL_97 | 1.0 | 0.0 | 1.0 |
| GCKIBPGL_98 | 0.0 | 1.0 | 0.0 |
| GCKIBPGL_99 | 1.0 | 0.0 | 1.0 |
| GCKIBPGL_101 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| No hit found | |||||
Phigaro v2.4.0 (Database: Jan. 2024 release)