Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| APFCHOBF_16 | 57789 | 58493 | WalR | 4.91e-113 | transcriptional regulatory protein | 83.40 | 100.00 | EPH95667 |
| APFCHOBF_33 | 13852 | 14049 | CspR | 4.12e-34 | cold shock protein | 89.39 | 100.00 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| APFCHOBF_1 | 0.0 | 1.0 | 0.0 |
| APFCHOBF_2 | 0.0 | 1.0 | 0.0 |
| APFCHOBF_3 | 0.0 | 1.0 | 0.0 |
| APFCHOBF_4 | 0.0 | 1.0 | 0.0 |
| APFCHOBF_5 | 0.0 | 1.0 | 0.0 |
| APFCHOBF_6 | 0.0 | 1.0 | 0.0 |
| APFCHOBF_7 | 0.0 | 1.0 | 0.0 |
| APFCHOBF_8 | 0.0 | 1.0 | 0.0 |
| APFCHOBF_9 | 0.0 | 1.0 | 0.0 |
| APFCHOBF_10 | 0.0 | 1.0 | 0.0 |
| APFCHOBF_11 | 0.0 | 1.0 | 0.0 |
| APFCHOBF_12 | 0.0 | 1.0 | 0.0 |
| APFCHOBF_13 | 0.0 | 1.0 | 0.0 |
| APFCHOBF_14 | 0.0 | 1.0 | 0.0 |
| APFCHOBF_15 | 0.0 | 1.0 | 0.0 |
| APFCHOBF_16 | 0.0 | 1.0 | 0.0 |
| APFCHOBF_17 | 0.0 | 1.0 | 0.0 |
| APFCHOBF_18 | 0.0 | 1.0 | 0.0 |
| APFCHOBF_19 | 0.0 | 1.0 | 0.0 |
| APFCHOBF_20 | 0.0 | 1.0 | 0.0 |
| APFCHOBF_21 | 0.0 | 1.0 | 0.0 |
| APFCHOBF_22 | 0.0 | 1.0 | 0.0 |
| APFCHOBF_23 | 0.0 | 1.0 | 0.0 |
| APFCHOBF_24 | 0.0 | 1.0 | 0.0 |
| APFCHOBF_25 | 0.0 | 1.0 | 0.0 |
| APFCHOBF_26 | 0.0 | 1.0 | 0.0 |
| APFCHOBF_27 | 0.0 | 1.0 | 0.0 |
| APFCHOBF_28 | 0.0 | 1.0 | 0.0 |
| APFCHOBF_29 | 0.0 | 1.0 | 0.0 |
| APFCHOBF_30 | 0.0 | 1.0 | 0.0 |
| APFCHOBF_31 | 0.0 | 1.0 | 0.0 |
| APFCHOBF_32 | 0.0 | 1.0 | 0.0 |
| APFCHOBF_33 | 0.0 | 1.0 | 0.0 |
| APFCHOBF_34 | 0.0 | 1.0 | 0.0 |
| APFCHOBF_35 | 0.0 | 1.0 | 0.0 |
| APFCHOBF_36 | 0.0 | 1.0 | 0.0 |
| APFCHOBF_37 | 1.0 | 0.0 | 1.0 |
| APFCHOBF_38 | 0.0 | 1.0 | 0.0 |
| APFCHOBF_39 | 1.0 | 0.0 | 1.0 |
| APFCHOBF_40 | 1.0 | 0.0 | 1.0 |
| APFCHOBF_41 | 0.0 | 1.0 | 0.0 |
| APFCHOBF_42 | 0.0 | 1.0 | 0.0 |
| APFCHOBF_43 | 0.0 | 1.0 | 0.0 |
| APFCHOBF_44 | 0.0 | 1.0 | 0.0 |
| APFCHOBF_45 | 1.0 | 0.0 | 1.0 |
| APFCHOBF_46 | 0.0 | 1.0 | 0.0 |
| APFCHOBF_47 | 0.0 | 1.0 | 0.0 |
| APFCHOBF_48 | 0.0 | 1.0 | 0.0 |
| APFCHOBF_49 | 0.0 | 1.0 | 0.0 |
| APFCHOBF_50 | 1.0 | 0.0 | 1.0 |
| APFCHOBF_51 | 0.0 | 1.0 | 0.0 |
| APFCHOBF_52 | 0.0 | 1.0 | 0.0 |
| APFCHOBF_53 | 0.0 | 1.0 | 0.0 |
| APFCHOBF_54 | 0.0 | 1.0 | 0.0 |
| APFCHOBF_55 | 1.0 | 0.0 | 1.0 |
| APFCHOBF_56 | 0.0 | 1.0 | 0.0 |
| APFCHOBF_57 | 0.0 | 1.0 | 0.0 |
| APFCHOBF_58 | 0.0 | 1.0 | 0.0 |
| APFCHOBF_59 | 1.0 | 0.0 | 1.0 |
| APFCHOBF_60 | 1.0 | 0.0 | 1.0 |
| APFCHOBF_61 | 1.0 | 0.0 | 1.0 |
| APFCHOBF_62 | 0.0 | 1.0 | 0.0 |
| APFCHOBF_63 | 1.0 | 0.0 | 1.0 |
| APFCHOBF_64 | 1.0 | 0.0 | 1.0 |
| APFCHOBF_65 | 1.0 | 0.0 | 1.0 |
| APFCHOBF_66 | 1.0 | 0.0 | 1.0 |
| APFCHOBF_67 | 0.0 | 1.0 | 0.0 |
| APFCHOBF_68 | 1.0 | 0.0 | 1.0 |
| APFCHOBF_69 | 1.0 | 0.0 | 1.0 |
| APFCHOBF_70 | 1.0 | 0.0 | 1.0 |
| APFCHOBF_71 | 1.0 | 0.0 | 1.0 |
| APFCHOBF_73 | 1.0 | 0.0 | 1.0 |
| APFCHOBF_74 | 1.0 | 0.0 | 1.0 |
| APFCHOBF_75 | 1.0 | 0.0 | 1.0 |
| APFCHOBF_77 | 1.0 | 0.0 | 1.0 |
| APFCHOBF_78 | 1.0 | 0.0 | 1.0 |
| APFCHOBF_79 | 1.0 | 0.0 | 1.0 |
| APFCHOBF_80 | 1.0 | 0.0 | 1.0 |
| APFCHOBF_81 | 1.0 | 0.0 | 1.0 |
| APFCHOBF_82 | 1.0 | 0.0 | 1.0 |
| APFCHOBF_83 | 1.0 | 0.0 | 1.0 |
| APFCHOBF_84 | 0.0 | 1.0 | 0.0 |
| APFCHOBF_85 | 1.0 | 0.0 | 1.0 |
| APFCHOBF_86 | 1.0 | 0.0 | 1.0 |
| APFCHOBF_87 | 1.0 | 0.0 | 1.0 |
| APFCHOBF_88 | 1.0 | 0.0 | 1.0 |
| APFCHOBF_89 | 0.0 | 1.0 | 0.0 |
| APFCHOBF_90 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| APFCHOBF_1 | 309653 | 316768 | False | Siphoviridae | VOG4556, VOG0202, VOG1886, VOG4581, VOG9597, VOG4841, VOG0226 |
| APFCHOBF_4 | 53767 | 62130 | False | Siphoviridae | VOG0204, VOG4568, VOG4556, VOG5051, VOG4544, VOG4581, VOG4841, VOG0205 |
| APFCHOBF_31 | 918 | 29292 | False | Siphoviridae | VOG7017, VOG0861, VOG4683, VOG4619, VOG0801, VOG1323, VOG0725, VOG0799, VOG1321, VOG9583, VOG1320, VOG4713, VOG1322, VOG0694, VOG4555, VOG4564, VOG0720, VOG10227, VOG0796, VOG4570, VOG0198, VOG1183, VOG3643, VOG3643, VOG0152, VOG9741, VOG0536, VOG9860, VOG0189, VOG4566, VOG0186, VOG1309 |
| APFCHOBF_38 | 2 | 20392 | False | Siphoviridae | VOG6455, VOG4599, VOG4605, VOG4545, VOG0800, VOG0725, VOG0799, VOG0724, VOG5660, VOG0723, VOG4713, VOG1322, VOG1887, VOG3434, VOG4555, VOG1183, VOG1300, VOG4564, VOG0720, VOG4544, VOG0796 |
Phigaro v2.4.0 (Database: Jan. 2024 release)