Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| FHGHMACG_4 | 96916 | 97110 | CspA | 1.39e-28 | cold shock protein | 84.61 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| FHGHMACG_1 | 0.0 | 1.0 | 0.0 |
| FHGHMACG_2 | 0.0 | 1.0 | 0.0 |
| FHGHMACG_3 | 0.0 | 1.0 | 0.0 |
| FHGHMACG_4 | 0.0 | 1.0 | 0.0 |
| FHGHMACG_5 | 0.0 | 1.0 | 0.0 |
| FHGHMACG_6 | 0.0 | 1.0 | 0.0 |
| FHGHMACG_7 | 0.0 | 1.0 | 0.0 |
| FHGHMACG_8 | 0.0 | 1.0 | 0.0 |
| FHGHMACG_9 | 0.0 | 1.0 | 0.0 |
| FHGHMACG_10 | 0.0 | 1.0 | 0.0 |
| FHGHMACG_11 | 0.0 | 1.0 | 0.0 |
| FHGHMACG_12 | 0.0 | 1.0 | 0.0 |
| FHGHMACG_13 | 0.0 | 1.0 | 0.0 |
| FHGHMACG_14 | 0.0 | 1.0 | 0.0 |
| FHGHMACG_15 | 0.0 | 1.0 | 0.0 |
| FHGHMACG_16 | 0.0 | 1.0 | 0.0 |
| FHGHMACG_17 | 0.0 | 1.0 | 0.0 |
| FHGHMACG_18 | 0.0 | 1.0 | 0.0 |
| FHGHMACG_19 | 0.0 | 1.0 | 0.0 |
| FHGHMACG_20 | 0.0 | 1.0 | 0.0 |
| FHGHMACG_21 | 0.0 | 1.0 | 0.0 |
| FHGHMACG_22 | 0.0 | 1.0 | 0.0 |
| FHGHMACG_23 | 0.0 | 1.0 | 0.0 |
| FHGHMACG_24 | 0.0 | 1.0 | 0.0 |
| FHGHMACG_25 | 0.0 | 1.0 | 0.0 |
| FHGHMACG_26 | 0.0 | 1.0 | 0.0 |
| FHGHMACG_27 | 0.0 | 1.0 | 0.0 |
| FHGHMACG_28 | 0.0 | 1.0 | 0.0 |
| FHGHMACG_29 | 0.0 | 1.0 | 0.0 |
| FHGHMACG_30 | 0.0 | 1.0 | 0.0 |
| FHGHMACG_31 | 0.0 | 1.0 | 0.0 |
| FHGHMACG_32 | 0.0 | 1.0 | 0.0 |
| FHGHMACG_33 | 0.0 | 1.0 | 0.0 |
| FHGHMACG_34 | 1.0 | 0.0 | 1.0 |
| FHGHMACG_35 | 0.0 | 1.0 | 0.0 |
| FHGHMACG_36 | 1.0 | 0.0 | 1.0 |
| FHGHMACG_37 | 0.0 | 1.0 | 0.0 |
| FHGHMACG_38 | 0.0 | 1.0 | 0.0 |
| FHGHMACG_39 | 0.0 | 1.0 | 0.0 |
| FHGHMACG_40 | 0.0 | 1.0 | 0.0 |
| FHGHMACG_41 | 0.0 | 1.0 | 0.0 |
| FHGHMACG_42 | 0.0 | 1.0 | 0.0 |
| FHGHMACG_43 | 0.0 | 1.0 | 0.0 |
| FHGHMACG_44 | 0.0 | 1.0 | 0.0 |
| FHGHMACG_45 | 0.0 | 1.0 | 0.0 |
| FHGHMACG_46 | 0.0 | 1.0 | 0.0 |
| FHGHMACG_47 | 0.0 | 1.0 | 0.0 |
| FHGHMACG_48 | 0.0 | 1.0 | 0.0 |
| FHGHMACG_49 | 0.0 | 1.0 | 0.0 |
| FHGHMACG_50 | 0.0 | 1.0 | 0.0 |
| FHGHMACG_51 | 1.0 | 0.0 | 1.0 |
| FHGHMACG_52 | 0.0 | 1.0 | 0.0 |
| FHGHMACG_53 | 0.0 | 1.0 | 0.0 |
| FHGHMACG_54 | 1.0 | 0.0 | 1.0 |
| FHGHMACG_55 | 0.0 | 1.0 | 0.0 |
| FHGHMACG_56 | 1.0 | 0.0 | 1.0 |
| FHGHMACG_57 | 0.0 | 1.0 | 0.0 |
| FHGHMACG_58 | 0.0 | 1.0 | 0.0 |
| FHGHMACG_59 | 1.0 | 0.0 | 1.0 |
| FHGHMACG_61 | 1.0 | 0.0 | 1.0 |
| FHGHMACG_62 | 0.0 | 1.0 | 0.0 |
| FHGHMACG_63 | 1.0 | 0.0 | 1.0 |
| FHGHMACG_64 | 0.0 | 1.0 | 0.0 |
| FHGHMACG_65 | 1.0 | 0.0 | 1.0 |
| FHGHMACG_66 | 0.0 | 1.0 | 0.0 |
| FHGHMACG_67 | 1.0 | 0.0 | 1.0 |
| FHGHMACG_68 | 0.0 | 1.0 | 0.0 |
| FHGHMACG_70 | 0.0 | 1.0 | 0.0 |
| FHGHMACG_71 | 0.0 | 1.0 | 0.0 |
| FHGHMACG_72 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| FHGHMACG_1 | 4608 | 27102 | False | Siphoviridae | VOG4856, VOG8224, VOG3462, VOG0801, VOG6163, VOG9471, VOG2225, VOG4586, VOG0704, VOG0539, VOG4589, VOG0204, VOG4553, VOG4568, VOG4556, VOG4544, VOG4581, VOG4841, VOG0195, VOG0198, VOG0686 |
| FHGHMACG_2 | 72407 | 106682 | False | Siphoviridae | VOG4552, VOG4010, VOG9671, VOG1298, VOG4390, VOG8916, VOG0686, VOG9927, VOG1183, VOG6140, VOG0198, VOG0686, VOG0689, VOG9503, VOG0796, VOG4544, VOG0720, VOG4564, VOG4555, VOG3434, VOG1887, VOG4713, VOG1330, VOG1900, VOG0704, VOG4634, VOG1333, VOG1334, VOG0083, VOG1335, VOG10608, VOG9888, VOG0648, VOG0641 |
| FHGHMACG_7 | 33187 | 64183 | False | Siphoviridae | VOG0054, VOG1637, VOG9998, VOG4705, VOG4334, VOG4856, VOG9997, VOG1050, VOG10972, VOG3462, VOG0801, VOG6163, VOG0209, VOG4586, VOG0207, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556, VOG1345, VOG4544, VOG4581, VOG4841, VOG0866 |
| FHGHMACG_13 | 39118 | 49155 | False | Siphoviridae | VOG6914, VOG4602, VOG8520, VOG2124, VOG1564, VOG9469, VOG0707, VOG3478, VOG7812, VOG5692, VOG4955, VOG0226, VOG0514, VOG4566, VOG0686, VOG1183, VOG2388, VOG4693 |
Phigaro v2.4.0 (Database: Jan. 2024 release)