Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| LPMNNKOO_22 | 357187 | 357891 | WalR | 2.29e-114 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| LPMNNKOO_55 | 54380 | 54574 | CspR | 6.18e-30 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| LPMNNKOO_55 | 54380 | 54577 | CspA | 9.48e-30 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| LPMNNKOO_1 | 0.0 | 1.0 | 0.0 |
| LPMNNKOO_2 | 0.0 | 1.0 | 0.0 |
| LPMNNKOO_3 | 0.0 | 1.0 | 0.0 |
| LPMNNKOO_4 | 0.0 | 1.0 | 0.0 |
| LPMNNKOO_5 | 1.0 | 0.0 | 1.0 |
| LPMNNKOO_6 | 0.0 | 1.0 | 0.0 |
| LPMNNKOO_7 | 0.0 | 1.0 | 0.0 |
| LPMNNKOO_8 | 0.0 | 1.0 | 0.0 |
| LPMNNKOO_9 | 1.0 | 0.0 | 1.0 |
| LPMNNKOO_10 | 0.0 | 1.0 | 0.0 |
| LPMNNKOO_11 | 0.0 | 1.0 | 0.0 |
| LPMNNKOO_12 | 0.0 | 1.0 | 0.0 |
| LPMNNKOO_13 | 0.0 | 1.0 | 0.0 |
| LPMNNKOO_14 | 0.0 | 1.0 | 0.0 |
| LPMNNKOO_15 | 0.0 | 1.0 | 0.0 |
| LPMNNKOO_16 | 0.0 | 1.0 | 0.0 |
| LPMNNKOO_17 | 1.0 | 0.0 | 1.0 |
| LPMNNKOO_18 | 1.0 | 0.0 | 1.0 |
| LPMNNKOO_19 | 1.0 | 0.0 | 1.0 |
| LPMNNKOO_20 | 0.0 | 1.0 | 0.0 |
| LPMNNKOO_21 | 0.0 | 1.0 | 0.0 |
| LPMNNKOO_22 | 0.0 | 1.0 | 0.0 |
| LPMNNKOO_24 | 1.0 | 0.0 | 1.0 |
| LPMNNKOO_25 | 0.0 | 1.0 | 0.0 |
| LPMNNKOO_26 | 1.0 | 0.0 | 1.0 |
| LPMNNKOO_27 | 1.0 | 0.0 | 1.0 |
| LPMNNKOO_28 | 1.0 | 0.0 | 1.0 |
| LPMNNKOO_30 | 1.0 | 0.0 | 1.0 |
| LPMNNKOO_33 | 0.0 | 1.0 | 0.0 |
| LPMNNKOO_44 | 0.0 | 1.0 | 0.0 |
| LPMNNKOO_52 | 0.0 | 1.0 | 0.0 |
| LPMNNKOO_53 | 0.0 | 1.0 | 0.0 |
| LPMNNKOO_54 | 0.0 | 1.0 | 0.0 |
| LPMNNKOO_55 | 0.0 | 1.0 | 0.0 |
| LPMNNKOO_56 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| LPMNNKOO_1 | 68470 | 102979 | False | Siphoviridae | VOG0054, VOG1637, VOG8294, VOG4705, VOG0804, VOG0870, VOG8438, VOG3463, VOG3462, VOG0801, VOG3636, VOG1323, VOG0725, VOG0799, VOG5660, VOG0723, VOG4713, VOG1887, VOG3434, VOG4555, VOG4564, VOG0720, VOG10227, VOG0796, VOG0686, VOG3015, VOG0198, VOG1049, VOG9671, VOG0044, VOG0044, VOG4693, VOG4552, VOG4566, VOG0186, VOG1309, VOG7298, VOG0181, VOG9655, VOG6495, VOG11003, VOG1638 |
| LPMNNKOO_6 | 6653 | 10720 | False | Siphoviridae | VOG0650, VOG1302, VOG7236, VOG4552, VOG8520, VOG8520 |
| LPMNNKOO_13 | 2499 | 9744 | False | Siphoviridae | VOG0586, VOG0327, VOG4609, VOG4632, VOG6545, VOG0322, VOG9667, VOG4548, VOG0321 |
| LPMNNKOO_44 | 2943 | 22106 | False | Siphoviridae | VOG4844, VOG4556, VOG4573, VOG4553, VOG0562, VOG4589, VOG0539, VOG0704, VOG4586, VOG0541, VOG6163, VOG0801, VOG4619, VOG3498, VOG9997, VOG8917, VOG9888 |
Phigaro v2.4.0 (Database: Jan. 2024 release)