Probiotic potential risk score


ARGs VFs PGs PPRS
0022.00

PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).

Antibiotic resistance genes


Comprehensive Antibiotic Resistance Database (CARD)

Query ID Begin End ARO name ARO accession CARD name Identity Coverage Accession no.
No hit found

RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)

ResFinder

Query ID Begin End Resistance gene Phenotype Identity Coverage Accession no.
HDBBOELK_371552blaTEM-116Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin100.0064.11AY425988
HDBBOELK_371552blaTEM-229Unknown Beta-lactam100.0064.11MG821356

ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)

AMRFinderPlus

Query ID Begin End Gene symbol Sequence name Method Identity Coverage Accession no.
HDBBOELK_373551blaTEMTEM family class A beta-lactamasePARTIAL_CONTIG_ENDX100.0063.99WP_000027050.1

AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)

Virulence factors


Virulence Factor Database (VFDB)

Query ID qstart qend Gene name e-value VF name VF category Identity Coverage Accession no.
No hit found

BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)

VirulenceFinder

Query ID Begin End Database Virulence factor Protein function Identity Coverage Accession no.
No hit found

VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)

Pathogenic genes


PHI-base

Query ID qstart qend Gene name e-value Function Identity Coverage Gene ID
HDBBOELK_5229483228779WalR1.48e-114transcriptional regulatory protein84.25100.00EPH95667
HDBBOELK_2215678215484CspR1.61e-29cold shock protein84.6198.48AAO82613
HDBBOELK_2215678215481CspA2.47e-29cold shock protein84.85100.00CAA62903

BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)

Plasmid


PlasmidFinder

Query ID Begin End Plasmid Query / Template Identity Accession no.
HDBBOELK_259301883repUS64954 / 95497.59JN601038

PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)

PlasmidHunter

Query ID Prediction Chromosome Plasmid
HDBBOELK_10.01.00.0
HDBBOELK_20.01.00.0
HDBBOELK_30.01.00.0
HDBBOELK_40.01.00.0
HDBBOELK_50.01.00.0
HDBBOELK_60.01.00.0
HDBBOELK_70.01.00.0
HDBBOELK_80.01.00.0
HDBBOELK_90.01.00.0
HDBBOELK_100.01.00.0
HDBBOELK_110.01.00.0
HDBBOELK_120.01.00.0
HDBBOELK_130.01.00.0
HDBBOELK_140.01.00.0
HDBBOELK_150.01.00.0
HDBBOELK_160.01.00.0
HDBBOELK_171.00.01.0
HDBBOELK_180.01.00.0
HDBBOELK_190.01.00.0
HDBBOELK_200.01.00.0
HDBBOELK_210.01.00.0
HDBBOELK_220.01.00.0
HDBBOELK_231.00.01.0
HDBBOELK_241.00.01.0
HDBBOELK_251.00.01.0
HDBBOELK_261.00.01.0
HDBBOELK_271.00.01.0
HDBBOELK_321.00.01.0

PlasmidHunter v 1.4.5 (Database: May. 2024 release)

Prophage


Phigaro

Query ID Begin End Transposable Taxonomy pVOGs
HDBBOELK_23876568590FalseSiphoviridaeVOG9998, VOG8870, VOG10957, VOG4599, VOG4605, VOG6163, VOG0660, VOG0209, VOG4586, VOG0207, VOG0205, VOG0204, VOG4553, VOG4568, VOG4556, VOG6939, VOG1886, VOG4581, VOG4841, VOG0198, VOG6005, VOG0189, VOG4566, VOG0514, VOG10904, VOG0226, VOG0283, VOG0685
HDBBOELK_5230726242995FalseSiphoviridaeVOG0198, VOG0204, VOG4568, VOG4556, VOG2935, VOG4544, VOG4581, VOG5088, VOG4841, VOG0205, VOG6414, VOG4609, VOG4632
HDBBOELK_93376361694FalseSiphoviridaeVOG0322, VOG6545, VOG4632, VOG4609, VOG0327, VOG0044, VOG3643, VOG4673, VOG4844, VOG4556, VOG4573, VOG4553, VOG0562, VOG4589, VOG0539, VOG0704, VOG4586, VOG0541, VOG6163, VOG0801, VOG4619, VOG3498, VOG9997, VOG8917, VOG1637

Phigaro v2.4.0 (Database: Jan. 2024 release)


Insertion sequence (IS) elements