Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 0 | 0.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| ACJEFJIM_3 | 8446 | 9476 | repUS67 | 1038 / 1039 | 89.98 | CP006012 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| ACJEFJIM_1 | 0.0 | 1.0 | 0.0 |
| ACJEFJIM_2 | 0.0 | 1.0 | 0.0 |
| ACJEFJIM_3 | 1.0 | 0.0 | 1.0 |
| ACJEFJIM_4 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| ACJEFJIM_2 | 271438 | 297201 | True | Siphoviridae | VOG4705, VOG4334, VOG9998, VOG4856, VOG3463, VOG3462, VOG0801, VOG6163, VOG0209, VOG0207, VOG0205, VOG0204, VOG4553, VOG8387, VOG0944, VOG4573, VOG4556, VOG1886, VOG1886, VOG0866, VOG9312, VOG4581, VOG4841, VOG0866, VOG0198 |
| ACJEFJIM_2 | 391859 | 402488 | False | Siphoviridae | VOG4799, VOG0181, VOG3622, VOG9667, VOG0862, VOG0275, VOG7188, VOG0918, VOG5818, VOG5148 |
| ACJEFJIM_3 | 11968 | 33614 | False | Siphoviridae | VOG5722, VOG4544, VOG5721, VOG6031, VOG6524, VOG6246, VOG6941, VOG6036, VOG7629, VOG9713, VOG5534, VOG4783, VOG10609, VOG8355, VOG0648, VOG0753, VOG0054 |
| ACJEFJIM_3 | 64785 | 70177 | False | Unknown | VOG0018, VOG0536, VOG4567, VOG0047, VOG3307 |
| ACJEFJIM_3 | 100581 | 105964 | False | Unknown | VOG0025, VOG7627, VOG4570 |
Phigaro v2.4.0 (Database: Jan. 2024 release)