Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 0 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PIOEHAJG_1 | 1837512 | 1838951 | AAC(6')-Ie-APH(2'')-Ia bifunctional protein | ARO:3002597 | AAC6_Ie_APH2_Ia | 100.00 | 100.00 | GU565967.1 |
| PIOEHAJG_1 | 393273 | 395192 | tet(W) | ARO:3000194 | tet(W) | 96.71 | 100.00 | AJ222769.3 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| PIOEHAJG_1 | 1837512 | 1838951 | aac(6')-aph(2'') | Gentamicin, Tobramycin, Netilmicin, Kanamycin, Amikacin, Dibekacin, Isepamicin, Fortimicin, Streptomycin | 100.00 | 100.00 | M13771 |
| PIOEHAJG_1 | 393273 | 395192 | tet(W) | Doxycycline, Tetracycline, Minocycline | 98.96 | 100.00 | FN396364 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PIOEHAJG_1 | 1837515 | 1838951 | aac(6')-Ie/aph(2'')-Ia | bifunctional aminoglycoside N-acetyltransferase AAC(6')-Ie/aminoglycoside O-phosphotransferase APH(2'')-Ia | EXACTX | 100.00 | 100.00 | WP_001028144.1 |
| PIOEHAJG_1 | 393273 | 395189 | tet(W) | tetracycline resistance ribosomal protection protein Tet(W) | BLASTX | 99.53 | 100.00 | WP_000691721.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| PIOEHAJG_1 | 0.0 | 1.0 | 0.0 |
| PIOEHAJG_2 | 1.0 | 0.0 | 1.0 |
| PIOEHAJG_3 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| PIOEHAJG_1 | 910439 | 945395 | False | Siphoviridae | VOG0736, VOG0737, VOG9706, VOG5878, VOG0195, VOG0275, VOG5278, VOG5998, VOG5562, VOG5280, VOG5317, VOG0638, VOG0686, VOG0198, VOG0866, VOG4841, VOG4581, VOG4544, VOG4556, VOG4568, VOG4553, VOG0204, VOG4589, VOG5436, VOG0704, VOG4586, VOG2225, VOG9471, VOG6163, VOG0801, VOG3462, VOG0979, VOG4910, VOG4887 |
| PIOEHAJG_1 | 1037201 | 1067279 | False | Siphoviridae | VOG0686, VOG7111, VOG0198, VOG4373, VOG5088, VOG0866, VOG9331, VOG0195, VOG4841, VOG4581, VOG9312, VOG0866, VOG1886, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG0207, VOG4586, VOG5088, VOG0209, VOG0801, VOG3462, VOG3463, VOG4626, VOG8438, VOG4334, VOG4705, VOG8917, VOG0703 |
| PIOEHAJG_1 | 1507058 | 1512389 | False | Unknown | VOG0267, VOG0267, VOG0267, VOG3349, VOG10649, VOG9667, VOG6495, VOG3622, VOG9667, VOG0862, VOG0275 |
| PIOEHAJG_1 | 1607582 | 1612913 | False | Unknown | VOG0267, VOG0267, VOG0267, VOG3349, VOG10649, VOG9667, VOG6495, VOG3622, VOG9667, VOG0862, VOG0275 |
Phigaro v2.4.0 (Database: Jan. 2024 release)