Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| LLKJPLHC_12 | 292291 | 291587 | WalR | 4.92e-112 | transcriptional regulatory protein | 83.40 | 100.00 | EPH95667 |
| LLKJPLHC_23 | 271587 | 271390 | CspR | 1.89e-32 | cold shock protein | 87.88 | 100.00 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| LLKJPLHC_26 | 1341 | 2399 | repUS75 | 1059 / 1059 | 99.91 | CP002393 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| LLKJPLHC_1 | 0.0 | 1.0 | 0.0 |
| LLKJPLHC_2 | 0.0 | 1.0 | 0.0 |
| LLKJPLHC_3 | 0.0 | 1.0 | 0.0 |
| LLKJPLHC_4 | 0.0 | 1.0 | 0.0 |
| LLKJPLHC_5 | 0.0 | 1.0 | 0.0 |
| LLKJPLHC_6 | 0.0 | 1.0 | 0.0 |
| LLKJPLHC_7 | 0.0 | 1.0 | 0.0 |
| LLKJPLHC_8 | 0.0 | 1.0 | 0.0 |
| LLKJPLHC_9 | 0.0 | 1.0 | 0.0 |
| LLKJPLHC_10 | 0.0 | 1.0 | 0.0 |
| LLKJPLHC_11 | 0.0 | 1.0 | 0.0 |
| LLKJPLHC_12 | 0.0 | 1.0 | 0.0 |
| LLKJPLHC_13 | 0.0 | 1.0 | 0.0 |
| LLKJPLHC_14 | 0.0 | 1.0 | 0.0 |
| LLKJPLHC_15 | 0.0 | 1.0 | 0.0 |
| LLKJPLHC_16 | 0.0 | 1.0 | 0.0 |
| LLKJPLHC_17 | 1.0 | 0.0 | 1.0 |
| LLKJPLHC_18 | 0.0 | 1.0 | 0.0 |
| LLKJPLHC_19 | 1.0 | 0.0 | 1.0 |
| LLKJPLHC_20 | 0.0 | 1.0 | 0.0 |
| LLKJPLHC_21 | 0.0 | 1.0 | 0.0 |
| LLKJPLHC_22 | 1.0 | 0.0 | 1.0 |
| LLKJPLHC_23 | 0.0 | 1.0 | 0.0 |
| LLKJPLHC_24 | 1.0 | 0.0 | 1.0 |
| LLKJPLHC_25 | 1.0 | 0.0 | 1.0 |
| LLKJPLHC_26 | 1.0 | 0.0 | 1.0 |
| LLKJPLHC_27 | 0.0 | 1.0 | 0.0 |
| LLKJPLHC_28 | 0.0 | 1.0 | 0.0 |
| LLKJPLHC_29 | 1.0 | 0.0 | 1.0 |
| LLKJPLHC_30 | 1.0 | 0.0 | 1.0 |
| LLKJPLHC_31 | 1.0 | 0.0 | 1.0 |
| LLKJPLHC_32 | 1.0 | 0.0 | 1.0 |
| LLKJPLHC_33 | 1.0 | 0.0 | 1.0 |
| LLKJPLHC_34 | 0.0 | 1.0 | 0.0 |
| LLKJPLHC_35 | 1.0 | 0.0 | 1.0 |
| LLKJPLHC_36 | 1.0 | 0.0 | 1.0 |
| LLKJPLHC_37 | 0.0 | 1.0 | 0.0 |
| LLKJPLHC_39 | 1.0 | 0.0 | 1.0 |
| LLKJPLHC_40 | 1.0 | 0.0 | 1.0 |
| LLKJPLHC_42 | 1.0 | 0.0 | 1.0 |
| LLKJPLHC_43 | 1.0 | 0.0 | 1.0 |
| LLKJPLHC_44 | 1.0 | 0.0 | 1.0 |
| LLKJPLHC_45 | 0.0 | 1.0 | 0.0 |
| LLKJPLHC_46 | 0.0 | 1.0 | 0.0 |
| LLKJPLHC_47 | 1.0 | 0.0 | 1.0 |
| LLKJPLHC_48 | 1.0 | 0.0 | 1.0 |
| LLKJPLHC_56 | 0.0 | 1.0 | 0.0 |
| LLKJPLHC_67 | 0.0 | 1.0 | 0.0 |
| LLKJPLHC_78 | 0.0 | 1.0 | 0.0 |
| LLKJPLHC_83 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| LLKJPLHC_11 | 27667 | 36544 | False | Siphoviridae | VOG3549, VOG0650, VOG0083, VOG0083, VOG1292, VOG4566, VOG6238, VOG1638, VOG11003, VOG4694 |
| LLKJPLHC_15 | 853 | 26064 | False | Siphoviridae | VOG0205, VOG0204, VOG4553, VOG4573, VOG4556, VOG7540, VOG1886, VOG4581, VOG4841, VOG1345, VOG10904, VOG4570, VOG0198, VOG6815, VOG0102, VOG4643, VOG0275, VOG0195, VOG4567, VOG9741, VOG4693, VOG6623, VOG0189, VOG4566, VOG10904, VOG0226, VOG0322, VOG0321, VOG3642, VOG4967, VOG10867, VOG0181, VOG4552, VOG4552, VOG3622, VOG9667 |
| LLKJPLHC_45 | 76479 | 110279 | False | Siphoviridae | VOG0054, VOG1637, VOG0648, VOG3498, VOG4763, VOG4633, VOG4545, VOG1898, VOG4589, VOG0204, VOG4553, VOG4573, VOG4556, VOG4544, VOG0519, VOG4841, VOG0198, VOG5562, VOG6795, VOG5998, VOG4609, VOG4632, VOG6545, VOG0322, VOG4548, VOG0321, VOG4967, VOG1302, VOG10867, VOG0181, VOG7236, VOG8520, VOG8520, VOG9667, VOG10484, VOG0529 |
Phigaro v2.4.0 (Database: Jan. 2024 release)