Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 0 | 0 | 3.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| EBKFNKDA_1 | 2136426 | 2137172 | ErmB | ARO:3000375 | ErmB | 99.60 | 100.00 | AF242872.1 |
| EBKFNKDA_1 | 1394470 | 1396395 | tet(W) | ARO:3000194 | tet(W) | 96.71 | 100.31 | AJ222769.3 |
| EBKFNKDA_1 | 554586 | 555080 | lnuC | ARO:3002837 | lnuC | 97.56 | 100.00 | AY928180.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| EBKFNKDA_1 | 2136426 | 2137172 | erm(B) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.87 | 100.00 | AF242872 |
| EBKFNKDA_1 | 554586 | 555080 | lnu(C) | Lincomycin | 98.99 | 100.00 | AY928180 |
| EBKFNKDA_1 | 1394479 | 1396395 | tet(W) | Doxycycline, Tetracycline, Minocycline | 98.96 | 99.84 | FN396364 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| EBKFNKDA_1 | 2136426 | 2137169 | erm(B) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B) | BLASTX | 99.60 | 100.00 | WP_032489723.1 |
| EBKFNKDA_1 | 1394479 | 1396395 | tet(W) | tetracycline resistance ribosomal protection protein Tet(W) | BLASTX | 99.53 | 100.00 | WP_000691721.1 |
| EBKFNKDA_1 | 554589 | 555080 | lnu(C) | lincosamide nucleotidyltransferase Lnu(C) | BLASTX | 97.56 | 100.00 | WP_063851341.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| EBKFNKDA_1 | 0.0 | 1.0 | 0.0 |
| EBKFNKDA_2 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| EBKFNKDA_1 | 176607 | 212380 | False | Siphoviridae | VOG8520, VOG0862, VOG8520, VOG6945, VOG4510, VOG2228, VOG0321, VOG10850, VOG0322, VOG4548, VOG0226, VOG4606, VOG8605, VOG4966, VOG6970, VOG6330, VOG10904, VOG0327, VOG10904, VOG6005, VOG0198, VOG0796, VOG10227, VOG0720, VOG4564, VOG10914, VOG4572, VOG4713, VOG0723, VOG5660, VOG0724, VOG0799, VOG0725, VOG0800, VOG4545, VOG0727, VOG4599, VOG0565, VOG0648, VOG0083, VOG8551, VOG9945, VOG4705, VOG0861, VOG5087 |
| EBKFNKDA_1 | 1567611 | 1575405 | False | Myoviridae | VOG0348, VOG0382, VOG0384, VOG0226, VOG0862 |
Phigaro v2.4.0 (Database: Jan. 2024 release)