Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| DFCGJKMB_1 | 133343 | 134047 | WalR | 2.13e-111 | transcriptional regulatory protein | 83.40 | 100.00 | EPH95667 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| DFCGJKMB_1 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| DFCGJKMB_1 | 50025 | 60360 | False | Siphoviridae | VOG4589, VOG0204, VOG4568, VOG4556, VOG5051, VOG4544, VOG4581, VOG4606 |
| DFCGJKMB_1 | 957392 | 990062 | False | Siphoviridae | VOG1309, VOG0186, VOG4566, VOG0226, VOG9860, VOG0536, VOG0152, VOG3643, VOG10759, VOG0044, VOG0198, VOG4570, VOG4549, VOG1345, VOG3699, VOG4544, VOG0691, VOG0692, VOG5616, VOG1300, VOG1183, VOG4555, VOG4711, VOG0695, VOG0696, VOG0697, VOG0698, VOG5587, VOG5601, VOG9763, VOG0701, VOG4705, VOG4605, VOG4599, VOG6455, VOG7896, VOG0861, VOG7017 |
| DFCGJKMB_1 | 1391628 | 1399103 | True | Unknown | VOG0047, VOG5532, VOG3624, VOG8916, VOG6495 |
| DFCGJKMB_1 | 1781209 | 1809507 | False | Siphoviridae | VOG8916, VOG4918, VOG0054, VOG1637, VOG7896, VOG6455, VOG4599, VOG4605, VOG6163, VOG0800, VOG0725, VOG0799, VOG0724, VOG5660, VOG0723, VOG4713, VOG1322, VOG1887, VOG3434, VOG4555, VOG1300, VOG4564, VOG0720, VOG4544, VOG0796, VOG4570, VOG4643, VOG0198 |
| DFCGJKMB_1 | 1810137 | 1819260 | False | Siphoviridae | VOG0044, VOG10759, VOG3643, VOG0673, VOG2820, VOG9741, VOG0536, VOG9860, VOG0226, VOG4566, VOG0186, VOG1309, VOG8241 |
| DFCGJKMB_1 | 2084544 | 2112735 | False | Siphoviridae | VOG0703, VOG0054, VOG1637, VOG0648, VOG3498, VOG4763, VOG4633, VOG4545, VOG1898, VOG4589, VOG0204, VOG4553, VOG4573, VOG4556, VOG4544, VOG0519, VOG4841, VOG4673, VOG0744, VOG4693, VOG5562, VOG5998, VOG7363, VOG0189, VOG4566, VOG11003, VOG1309, VOG4600, VOG10867, VOG0181 |
| DFCGJKMB_1 | 2131901 | 2174209 | False | Siphoviridae | VOG3477, VOG4649, VOG0703, VOG0054, VOG1637, VOG7896, VOG6455, VOG4599, VOG4605, VOG4605, VOG6163, VOG2225, VOG4586, VOG0704, VOG0539, VOG4589, VOG0204, VOG10303, VOG4553, VOG4568, VOG4556, VOG3644, VOG4544, VOG4581, VOG4841, VOG4549, VOG4570, VOG0198, VOG3307, VOG0044, VOG0102, VOG3643, VOG0152, VOG4237, VOG9741, VOG9759, VOG0327, VOG5088, VOG4606, VOG6545, VOG3777, VOG4548, VOG0322, VOG0321, VOG3642, VOG10867, VOG0181 |
| DFCGJKMB_1 | 2458933 | 2471613 | True | Siphoviridae | VOG4549, VOG5532, VOG0944, VOG4570, VOG5088, VOG5088, VOG0198, VOG3307, VOG5317, VOG5280, VOG0982, VOG0189, VOG4799, VOG10867 |
Phigaro v2.4.0 (Database: Jan. 2024 release)