Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 24 | 27 | 36.12 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| CJPBALEN_1 | 1349749 | 1350717 | STER_RS07090 | 0.0 | Capsule | Immune modulation | 100.00 | 100.00 | WP_011681443 |
| CJPBALEN_1 | 1109964 | 1110557 | STR_RS05880 | 0.0 | Capsule | Immune modulation | 99.83 | 100.00 | WP_011226149 |
| CJPBALEN_1 | 1109964 | 1110557 | STER_RS06030 | 0.0 | Capsule | Immune modulation | 99.66 | 100.00 | WP_011226149 |
| CJPBALEN_1 | 1109964 | 1110557 | STU_RS15260 | 0.0 | Capsule | Immune modulation | 99.66 | 100.00 | WP_011226149 |
| CJPBALEN_1 | 1110557 | 1111426 | rfbA | 0.0 | Capsule | Immune modulation | 99.42 | 100.00 | WP_011681286 |
| CJPBALEN_1 | 21111 | 21950 | cbpD | 0.0 | Autolysin | Exoenzyme | 99.41 | 100.00 | WP_011226733 |
| CJPBALEN_1 | 1350735 | 1351712 | STER_RS07095 | 0.0 | Capsule | Immune modulation | 99.39 | 100.00 | WP_011681444 |
| CJPBALEN_1 | 873951 | 875609 | fbp54 | 0.0 | FBPs | Adherence | 99.34 | 100.00 | WP_011227179 |
| CJPBALEN_1 | 1347910 | 1348686 | STER_RS07075 | 0.0 | Capsule | Immune modulation | 99.10 | 100.00 | WP_011681440 |
| CJPBALEN_1 | 1353086 | 1353937 | rfbD | 0.0 | Capsule | Immune modulation | 98.36 | 100.00 | WP_014621820 |
| CJPBALEN_1 | 1349032 | 1349748 | STER_RS07085 | 0.0 | Capsule | Immune modulation | 98.33 | 100.00 | WP_011681442 |
| CJPBALEN_1 | 986744 | 988204 | STER_RS05320 | 0.0 | Capsule | Immune modulation | 98.02 | 100.00 | WP_011681177 |
| CJPBALEN_1 | 986012 | 986743 | STER_RS05315 | 0.0 | Capsule | Immune modulation | 97.81 | 100.00 | WP_011681176 |
| CJPBALEN_1 | 986012 | 986743 | STR_RS05260 | 0.0 | Capsule | Immune modulation | 97.68 | 100.00 | WP_011227248 |
| CJPBALEN_1 | 1148035 | 1148796 | srtA | 0.0 | Sortase A | Exoenzyme | 97.64 | 100.00 | - |
| CJPBALEN_1 | 984561 | 985301 | STER_RS05305 | 0.0 | Capsule | Immune modulation | 97.30 | 100.00 | WP_011681174 |
| CJPBALEN_1 | 986744 | 988204 | STU_RS14650 | 0.0 | Capsule | Immune modulation | 96.99 | 100.21 | WP_011226049 |
| CJPBALEN_1 | 976726 | 978181 | STR_RS05265 | 0.0 | Capsule | Immune modulation | 96.91 | 100.00 | WP_041827043 |
| CJPBALEN_1 | 984566 | 985301 | STR_RS05250 | 0.0 | Capsule | Immune modulation | 96.60 | 98.13 | WP_011227246 |
| CJPBALEN_1 | 1351709 | 1352967 | STER_RS07100 | 0.0 | Capsule | Immune modulation | 96.43 | 99.92 | WP_011681445 |
| CJPBALEN_1 | 984561 | 985301 | STU_RS14635 | 0.0 | Capsule | Immune modulation | 96.36 | 100.00 | WP_011226046 |
| CJPBALEN_1 | 983177 | 984504 | STER_RS05300 | 0.0 | Capsule | Immune modulation | 95.33 | 97.08 | WP_011681173 |
| CJPBALEN_1 | 985311 | 986003 | STU_RS14640 | 0.0 | Capsule | Immune modulation | 95.25 | 99.86 | WP_011226047 |
| CJPBALEN_1 | 985311 | 986003 | STR_RS05255 | 0.0 | Capsule | Immune modulation | 94.95 | 100.00 | WP_011227247 |
| CJPBALEN_1 | 983189 | 984504 | STU_RS14630 | 0.0 | Capsule | Immune modulation | 94.91 | 96.20 | WP_011226045 |
| CJPBALEN_1 | 1055248 | 1056026 | cshA | 0.0 | Cell surface hydrophobicity proteins | Adherence | 92.81 | 99.37 | - |
| CJPBALEN_1 | 985311 | 986003 | STER_RS05310 | 0.0 | Capsule | Immune modulation | 90.19 | 100.00 | WP_011681175 |
| CJPBALEN_1 | 591970 | 593273 | eno | 0.0 | Streptococcal enolase | Exoenzyme | 87.41 | 99.54 | WP_000022832 |
| CJPBALEN_1 | 1634073 | 1635083 | plr/gapA | 0.0 | Streptococcal plasmin receptor/GAPDH | Adherence | 86.96 | 99.90 | WP_002986042 |
| CJPBALEN_1 | 1108488 | 1109534 | rfbB | 0.0 | Capsule | Immune modulation | 83.30 | 99.90 | WP_002263087 |
| CJPBALEN_1 | 114688 | 115971 | tig/ropA | 0.0 | Trigger factor | Stress survival | 80.99 | 99.61 | WP_000107753 |
| CJPBALEN_1 | 982679 | 983128 | STU_RS14620 | 1.38e-180 | Capsule | Immune modulation | 92.44 | 100.00 | WP_011226042 |
| CJPBALEN_1 | 972755 | 973338 | SPD_RS01775 | 5.20e-145 | Capsule | Immune modulation | 82.91 | 96.20 | WP_001819836 |
| CJPBALEN_1 | 976261 | 976725 | STU_RS14645 | 0.0 | Capsule | Immune modulation | 97.63 | 63.52 | WP_011226048 |
| CJPBALEN_1 | 982372 | 982679 | STU_RS14615 | 1.12e-146 | Capsule | Immune modulation | 97.73 | 63.37 | WP_011226041 |
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| CJPBALEN_1 | 746777 | 747850 | MntE | 0.0 | manganese homeostasis | 94.41 | 99.72 | ABF32167 |
| CJPBALEN_1 | 1151483 | 1152466 | ldh(Sp_1220) | 0.0 | L-lactate dehydrogenase | 94.21 | 100.00 | AAK75326 |
| CJPBALEN_1 | 507610 | 508578 | spr0084 | 0.0 | pathogenitcity related | 92.88 | 98.48 | AAK98888 |
| CJPBALEN_1 | 1507651 | 1509954 | pfl2(Sp_0459) | 0.0 | formate acetyltransferase | 92.32 | 99.22 | AAK74619 |
| CJPBALEN_1 | 1224399 | 1225880 | SPD_0310 | 0.0 | UPF0371 protein SPD_0310 | 91.90 | 100.00 | ABJ54480 |
| CJPBALEN_1 | 766685 | 768931 | metE | 0.0 | methionine biosynthesis enzymes | 91.72 | 100.00 | AAK74738 |
| CJPBALEN_1 | 4623 | 5594 | prsA2 | 0.0 | ribose-phosphate pyrophosphokinase | 90.12 | 100.00 | ABF36968 |
| CJPBALEN_1 | 1394889 | 1393738 | potA | 0.0 | ABC transporter ATP-binding protein-spermidine/putrescine transport | 89.06 | 99.74 | AAL00050 |
| CJPBALEN_1 | 1367290 | 1365302 | uvrB | 0.0 | excinuclease ABC, B subunit | 88.99 | 100.00 | AE014259_2 |
| CJPBALEN_1 | 1135298 | 1133568 | ptsI | 0.0 | phosphoenolpyruvate-protein phosphotransferase | 88.04 | 100.00 | AAK34199 |
| CJPBALEN_1 | 1837326 | 1835848 | IMPDH | 0.0 | inosine-5'-monophosphate dehydrogenase | 87.02 | 100.00 | ADE32434 |
| CJPBALEN_1 | 591970 | 593271 | Eno | 0.0 | enolase | 85.75 | 99.77 | ABP90468 |
| CJPBALEN_1 | 52046 | 53137 | recA | 0.0 | DNA recombination and repair | 85.44 | 95.10 | AAL00560 |
| CJPBALEN_1 | 1822581 | 1820689 | gidA | 0.0 | tRNA uridine 5-carboxymethylaminomethyl modification enzyme | 84.94 | 98.90 | ABP91129 |
| CJPBALEN_1 | 771856 | 770147 | PGM | 0.0 | phosphoglucomutase | 83.89 | 99.65 | ACH87041 |
| CJPBALEN_1 | 1707745 | 1708755 | pdh | 0.0 | pyruvate dehydrogenase | 82.20 | 99.70 | ABP91006 |
| CJPBALEN_1 | 907485 | 906124 | mnmE | 0.0 | central tRNA-modifying GTPase | 81.14 | 99.56 | ABP90420 |
| CJPBALEN_1 | 1757182 | 1755290 | PepO | 0.0 | endopeptidase | 80.19 | 100.00 | ABF32980 |
| CJPBALEN_1 | 577534 | 578424 | bglB | 1.36e-178 | putative phospho--glucosidase | 88.89 | 99.66 | AAK33487 |
| CJPBALEN_1 | 821047 | 820109 | SP_0676 | 1.14e-166 | transcription facot | 81.15 | 97.20 | AAK74821 |
| CJPBALEN_1 | 769123 | 769980 | metF | 5.39e-164 | methionine biosynthesis enzymes | 85.66 | 99.31 | AAK74739 |
| CJPBALEN_1 | 1024192 | 1023488 | covR | 2.27e-130 | responder protein | 85.11 | 100.00 | AAK71319 |
| CJPBALEN_1 | 1196310 | 1195639 | rr01 | 4.23e-126 | response regulator | 84.82 | 99.56 | CAB54566 |
| CJPBALEN_1 | 775812 | 776480 | CiaR | 5.77e-124 | two-component response regulator | 87.00 | 99.55 | AAK74935 |
| CJPBALEN_1 | 775812 | 776483 | ciaR | 2.55e-122 | two component system response regulator | 85.27 | 99.12 | AIK75708 |
| CJPBALEN_1 | 1024192 | 1023488 | walR | 9.12e-121 | DNA-binding response regulator | 81.70 | 100.00 | ANC99504 |
| CJPBALEN_1 | 53320 | 53715 | SpxA2 | 1.97e-72 | transcriptional regulator | 89.39 | 100.00 | ERL21461 |
| CJPBALEN_1 | 116129 | 116629 | RopE (M5005_Spy_1611) | 3.62e-75 | probable DNA-directed RNA polymerase subunit delta | 82.04 | 87.43 | AAK34603 |
| CJPBALEN_1 | 1507675 | 1509948 | PFL (B9H01_RS01125) | 0.0 | formate C-acetyltransferase | 83.03 | 97.06 | MYN69560 |
| CJPBALEN_1 | 1743107 | 1742088 | ilvC (SPD_0406) | 0.0 | ketol-acid reductoisomerase (NADP(+)) | 96.47 | 100.00 | ABJ55451 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| CJPBALEN_1 | 1883109 | 1884056 | rep37 | 948 / 945 | 90.82 | HM050421 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| CJPBALEN_1 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| No hit found | |||||
Phigaro v2.4.0 (Database: Jan. 2024 release)